Research Output 1955 2019

2019

Investigating sources of variability and error in simulations of carbon dioxide in an urban region

Martin, C. R., Zeng, N., Karion, A., Mueller, K., Ghosh, S., Lopez-Coto, I., Gurney, K., Oda, T., Prasad, K., Liu, Y., Dickerson, R. R. & Whetstone, J., Feb 15 2019, In : Atmospheric Environment. 199, p. 55-69 15 p.

Research output: Contribution to journalArticle

urban region
carbon dioxide
climate
Eulerian analysis
simulation

Weak sustainability is not sustainable: Socioeconomic and environmental assessment of Inner Mongolia for the past three decades

Shang, C., Wu, T., Huang, G. & Wu, J., Feb 1 2019, In : Resources, Conservation and Recycling. p. 243-252 10 p.

Research output: Contribution to journalArticle

human development index
water footprint
ecological footprint
environmental assessment
coal mining
2018

A chorus of color: Hierarchical and graded information content of rapid color change signals in chameleons

Ligon, R. A. & McGraw, K., Sep 10 2018, In : Behavioral Ecology. 29, 5, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Chamaeleonidae
color
fighting
vocalization
animal
3 Citations

Acute tau knockdown in the hippocampus of adult mice causes learning and memory deficits

Velazquez, R., Ferreira, E., Tran, A., Turner, E. C., Belfiore, R., Branca, C. & Oddo, S., Jan 1 2018, (Accepted/In press) In : Aging Cell.

Research output: Contribution to journalArticle

Dependovirus
Memory Disorders
Hippocampus
Learning
Microtubule Proteins
8 Citations

Adaptive global innovative learning environment for glioblastoma: GBM AGILE

GBM AGILE Network, Feb 15 2018, In : Clinical Cancer Research. 24, 4, p. 737-743 7 p.

Research output: Contribution to journalReview article

Glioblastoma
Learning
Biomarkers
Therapeutics
Random Allocation
3 Citations

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Jones, M. R., Scott Mills, L., Alves, P. C., Callahan, C. M., Alves, J. M., Lafferty, D. J. R., Jiggins, F. M., Jensen, J., Melo-Ferreira, J. & Good, J. M., Jun 22 2018, In : Science. 360, 6395, p. 1355-1358 4 p.

Research output: Contribution to journalArticle

Hares
Molting
Snow
Gene Flow
Seeds
Apis
honeybee
Bees
symbiont
Apis mellifera

Advances in cell-free protein array methods

Yu, X., Petritis, B., Duan, H., Xu, D. & LaBaer, J., Jan 2 2018, In : Expert Review of Proteomics. 15, 1, p. 1-11 11 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Microarrays
Proteins
Biomarkers
Host-Pathogen Interactions

Advances in the application of comprehensive two-dimensional gas chromatography in metabolomics

Higgins Keppler, E. A., Jenkins, C. L., Davis, T. J. & Bean, H., Dec 1 2018, In : TrAC - Trends in Analytical Chemistry. 109, p. 275-286 12 p.

Research output: Contribution to journalReview article

Gas chromatography
Complex Mixtures
Sampling
Metabolomics
1 Citations

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

Dexter, E., Bollens, S. M., Cordell, J., Soh, H. Y., Rollwagen-Bollens, G., Pfeifer, S., Goudet, J. & Vuilleumier, S., Jun 1 2018, In : Biological Invasions. 20, 6, p. 1577-1595 19 p.

Research output: Contribution to journalArticle

Copepoda
coasts
coast
ballast water
estuarine ecosystem

A GIS-based framework to identify priority areas for urban environmental inequity mitigation and its application in Santiago de Chile

Fernández, I. C. & Wu, J., May 1 2018, In : Applied Geography. 94, p. 213-222 10 p.

Research output: Contribution to journalArticle

pollution control
urban areas
Chile
environmental impact
Geographical Information System
9 Citations

A global observatory for gene editing

Jasanoff, S. & Hurlbut, J., Mar 22 2018, In : Nature. 555, 7697, p. 435-437 3 p.

Research output: Contribution to journalComment/debate

Gene Editing

A Maximum-Likelihood Approach to Estimating the Insertion Frequencies of Transposable Elements from Population Sequencing Data

Jiang, X., Tang, H., Mohammed Ismail, W. & Lynch, M., Oct 1 2018, In : Molecular biology and evolution. 35, 10, p. 2560-2571 12 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
transposons
genome
allele
Population

A model for leaf temperature decoupling from air temperature

Blonder, B. & Michaletz, S. T., Nov 15 2018, In : Agricultural and Forest Meteorology. 262, p. 354-360 7 p.

Research output: Contribution to journalArticle

air temperature
leaves
temperature
heat
stomatal conductance

A multi-city comparison of front and backyard differences in plant species diversity and nitrogen cycling in residential landscapes

Locke, D. H., Avolio, M., Trammel, T., Roy Chowdhury, R., Morgan Grove, J., Rogan, J., Martin, D. G., Bettez, N., Cavender-Bares, J., Groffman, P. M., Hall, S., Heffernan, J. B., Hobbie, S. E., Larson, K., Morse, J. L., Neill, C., Ogden, L. A., O'Neil-Dunne, J. P. M., Pataki, D., Pearse, W. D. & 2 othersPolsky, C. & Wheeler, M. M., Oct 1 2018, In : Landscape and Urban Planning. 178, p. 102-111 10 p.

Research output: Contribution to journalArticle

species diversity
nitrogen
species richness
species evenness
soil
1 Citations

An ant genus-group (Prenolepis) illuminates the biogeography and drivers of insect diversification in the Indo-Pacific

Matos-Maraví, P., Clouse, R. M., Sarnat, E. M., Economo, E. P., LaPolla, J. S., Borovanska, M., Rabeling, C., Czekanski-Moir, J., Latumahina, F., Wilson, E. O. & Janda, M., Jun 1 2018, In : Molecular Phylogenetics and Evolution. 123, p. 16-25 10 p.

Research output: Contribution to journalArticle

Ants
biogeography
ant
Insects
Formicidae

An Escherichia coli nitrogen starvation response is important for mutualistic coexistence with Rhodopseudomonas palustris

McCully, A. L., Behringer, M. G., Gliessman, J. R., Pilipenko, E. V., Mazny, J. L., Lynch, M., Drummond, D. A. & McKinlay, J. B., Jul 1 2018, In : Applied and Environmental Microbiology. 84, 14, e00404-18.

Research output: Contribution to journalArticle

Rhodopseudomonas palustris
Rhodopseudomonas
coculture
Coculture Techniques
Starvation

A new niche for anoxygenic phototrophs as endoliths

Roush, D., Couradeau, E., Guida, B., Neuer, S. & Garcia-Pichel, F., Feb 1 2018, In : Applied and Environmental Microbiology. 84, 4, e02055-17.

Research output: Contribution to journalArticle

photosynthetic bacteria
autotrophs
niche
niches
Bacteria
2 Citations

An integrated view of complex landscapes: A big data-model integration approach to transdisciplinary science

Peters, D. P. C., Burruss, N. D., Rodriguez, L. L., McVey, D. S., Elias, E. H., Pelzel-Mccluskey, A. M., Derner, J. D., Schrader, T. S., Yao, J., Pauszek, S. J., Lombard, J., Archer, S. R., Bestelmeyer, B. T., Browning, D. M., Brungard, C. W., Hatfield, J. L., Hanan, N. P., Herrick, J. E., Okin, G. S., Sala, O. & 2 othersSavoy, H. & Vivoni, E., Jan 1 2018, In : BioScience. 68, 9, p. 653-669 17 p.

Research output: Contribution to journalArticle

Systems Integration
Management Information Systems
Biological Phenomena
Imagery (Psychotherapy)
management information systems

Antennal Olfactory Physiology and Behavior of Males of the Ponerine Ant Harpegnathos saltator

Ghaninia Tabarestani, M., Berger, S. L., Reinberg, D., Zwiebel, L. J., Ray, A. & Liebig, J., Jan 1 2018, (Accepted/In press) In : Journal of Chemical Ecology.

Research output: Contribution to journalArticle

Sensilla
Ants
Physiology
sensilla
Hydrocarbons
1 Citations

An unbiased genome-wide view of the mutation rate and spectrum of the endosymbiotic bacterium teredinibacter turnerae

Senra, M. V. X., Sung, W., Ackerman, M., Miller, S. F., Lynch, M. & Soares, C. A. G., Jan 1 2018, In : Genome biology and evolution. 10, 3, p. 723-730 8 p.

Research output: Contribution to journalArticle

Teredinibacter turnerae
Mutation Rate
mutation
genome
Base Pairing
Tenebrionidae
dunes
dune
Colorado River
valleys
1 Citations

A Perspective on Proteomics of Infectious Diseases

Venkatesh, A., Gil, C., Fuentes, M., LaBaer, J. & Srivastava, S., Jan 1 2018, (Accepted/In press) In : Proteomics - Clinical Applications.

Research output: Contribution to journalArticle

Proteomics
Communicable Diseases
Proteins
Pathogens
Health
1 Citations

A plant-produced vaccine protects mice against lethal West Nile virus infection without enhancing Zika or dengue virus infectivity

Lai, H., Paul, A. M., Sun, H., He, J., Yang, M., Bai, F. & Chen, Q., Jan 1 2018, (Accepted/In press) In : Vaccine.

Research output: Contribution to journalArticle

Zika virus
West Nile virus
Dengue virus
Dengue Virus
Virus Diseases
6 Citations

A roadmap for gene drives: using institutional analysis and development to frame research needs and governance in a systems context

Kuzma, J., Gould, F., Brown, Z., Collins, J., Delborne, J., Frow, E., Esvelt, K., Guston, D., Leitschuh, C., Oye, K. & Stauffer, S., Jan 24 2018, In : Journal of Responsible Innovation. 5, p. S13-S39

Research output: Contribution to journalArticle

Genes
Economics
Roadmap
Institutional development
Gene

Assessing fossil fuel CO2 emissions in California using atmospheric observations and models

Graven, H., Fischer, M. L., Lueker, T., Jeong, S., Guilderson, T. P., Keeling, R. F., Bambha, R., Brophy, K., Callahan, W., Cui, X., Frankenberg, C., Gurney, K., Lafranchi, B. W., Lehman, S. J., Michelsen, H., Miller, J. B., Newman, S., Paplawsky, W., Parazoo, N. C., Sloop, C. & 1 othersWalker, S. J., Jun 1 2018, In : Environmental Research Letters. 13, 6, 065007.

Research output: Contribution to journalArticle

Fossil Fuels
Fossil fuels
fossil fuel
systems analysis
atmospheric transport
1 Citations

Avian anthrophobia? Behavioral and physiological responses of house finches (Haemorhous mexicanus) to human and predator threats across an urban gradient

Weaver, M., Ligon, R. A., Mousel, M. & McGraw, K., Nov 1 2018, In : Landscape and Urban Planning. 179, p. 46-54 9 p.

Research output: Contribution to journalArticle

physiological response
behavioral response
predator
bird
songbird
1 Citations

Beyond Cost-Benefit Analysis in the Governance of Synthetic Biology

Wallach, W., Saner, M. & Marchant, G., Jan 1 2018, In : Hastings Center Report. 48, p. S70-S77

Research output: Contribution to journalArticle

Synthetic Biology
cost-benefit analysis
Cost-Benefit Analysis
biology
Biofuels

Big burns, big questions

Pyne, S., Jan 1 2018, (Accepted/In press) In : Ecology.

Research output: Contribution to journalArticle

Bioinformatics core competencies for undergraduate life sciences education

Wilson Sayres, M., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Jungck, J. R. & 14 othersNewman, J. D., Pearson, W., Ryder, E. F., Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martínez, A., Welch, L. R., Wright, R., Barone, L., Ebenbach, D., McWilliams, M., Olney, K. C. & Pauley, M. A., Jun 1 2018, In : PLoS One. 13, 6, e0196878.

Research output: Contribution to journalArticle

Bioinformatics
Education

Bio-inspired nest-site selection for distributing robots in low-communication environments

Cooke, G., Squires, E., Strickland, L., Bowers, K., Pippin, C., Pavlic, T. & Pratt, S., Jan 1 2018, Highlights of Practical Applications of Agents, Multi-Agent Systems, and Complexity: The PAAMS Collection - International Workshops of PAAMS 2018, Proceedings. Springer Verlag, p. 517-524 8 p. (Communications in Computer and Information Science; vol. 887).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Site selection
Nest
Robot
Robots
Communication
2 Citations

Building Capacity for a Global Genome Editing Observatory: Institutional Design

Saha, K., Hurlbut, J., Jasanoff, S., Ahmed, A., Appiah, A., Bartholet, E., Baylis, F., Bennett, G., Church, G., Cohen, I. G., Daley, G., Finneran, K., Hurlbut, W., Jaenisch, R., Lwoff, L., Kimes, J. P., Mills, P., Moses, J., Park, B. S., Parens, E. & 9 othersSalzman, R., Saxena, A., Simmet, H., Simoncelli, T., Snead, O. C., Rajan, K. S., Truog, R. D., Williams, P. & Woopen, C., Aug 1 2018, In : Trends in Biotechnology. 36, 8, p. 741-743 3 p.

Research output: Contribution to journalComment/debate

Capacity Building
Observatories
Genes
Gene Editing
2 Citations

Building effective fishery ecosystem plans

Levin, P. S., Essington, T. E., Marshall, K. N., Koehn, L. E., Anderson, L. G., Bundy, A., Carothers, C., Coleman, F., Gerber, L., Grabowski, J. H., Houde, E., Jensen, O. P., Möllmann, C., Rose, K., Sanchirico, J. N. & Smith, A. D. M., Jan 1 2018, (Accepted/In press) In : Marine Policy.

Research output: Contribution to journalArticle

fishery
fisheries
fishery management
fisheries management
ecosystems
1 Citations

Building resilience for uncertain water futures

Gober, P., Mar 29 2018, Springer International Publishing. 213 p.

Research output: Book/ReportBook

resilience
water
Water
policy making
management

Burning wood, burning woods

Pyne, S., Jan 1 2018, In : Harvard Design Magazine. 2018-January, 45, p. 216-219 4 p.

Research output: Contribution to journalShort survey

Wood
1 Citations

Cancer initiation and progression within the cancer microenvironment

Leong, S. P., Aktipis, C. A. & Maley, C., Jul 11 2018, (Accepted/In press) In : Clinical and Experimental Metastasis. p. 1-7 7 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Neoplasms
Growth
Biological Phenomena
Melanoma

Carotenoid-based plumage pigmentation and concentration as a function of sex and habitat type in the Yellow-breasted Boubou Laniarius atroflavus

Osinubi, S. T., McGraw, K., Ottosson, U., Brown, J. A., Briskie, J. V. & Chapman, H. M., Jun 12 2018, (Accepted/In press) In : Ostrich. p. 1-6 6 p.

Research output: Contribution to journalArticle

plumage
feather
carotenoid
habitat type
feathers

Carotenoid distribution in wild Japanese tree frogs (Hyla japonica) exposed to ionizing radiation in Fukushima

Giraudeau, M., Bonzom, J. M., Ducatez, S., Beaugelin-Seiller, K., Deviche, P., Lengagne, T., Cavalie, I., Camilleri, V., Adam-Guillermin, C. & McGraw, K., Dec 1 2018, In : Scientific Reports. 8, 1, 7438.

Research output: Contribution to journalArticle

carotenoid
frog
time domain reflectometry
radiation exposure
radionuclide

Change is key to frog survival

Collins, J., Mar 30 2018, In : Science. 359, 6383, p. 1458-1459 2 p.

Research output: Contribution to journalReview article

Anura

Characterization of the neuroinvasive profile of a pseudorabies virus recombinant expressing the mTurquoise2 reporter in single and multiple injection experiments

Hogue, I., Card, J. P., Rinaman, L., Staniszewska Goraczniak, H. & Enquist, L. W., Oct 1 2018, In : Journal of Neuroscience Methods. 308, p. 228-239 12 p.

Research output: Contribution to journalArticle

Suid Herpesvirus 1
Injections
Neurons
Technology
Infection
4 Citations

China's new rural “separating three property rights” land reform results in grassland degradation: Evidence from Inner Mongolia

Li, A., Wu, J., Zhang, X., Xue, J., Liu, Z., Han, X. & Huang, J., Feb 1 2018, In : Land Use Policy. 71, p. 170-182 13 p.

Research output: Contribution to journalArticle

land reform
property rights
Mongolia
agrarian reform
right of ownership

China's response to a national land-system sustainability emergency /704/844/685 /704/172/4081 perspective

Bryan, B. A., Gao, L., Ye, Y., Sun, X., Connor, J. D., Crossman, N. D., Stafford-Smith, M., Wu, J., He, C., Yu, D., Liu, Z., Li, A., Huang, Q., Ren, H., Deng, X., Zheng, H., Niu, J., Han, G. & Hou, X., Jul 12 2018, In : Nature. 559, 7713, p. 193-204 12 p.

Research output: Contribution to journalReview article

sustainability
United Nations
durability
sustainable development
programme

China’s progress towards sustainable land development and ecological civilization

Sun, X., Gao, L., Ren, H., Ye, Y., Li, A., Stafford-Smith, M., Connor, J. D., Wu, J. & Bryan, B. A., Jan 1 2018, (Accepted/In press) In : Landscape Ecology.

Research output: Contribution to journalArticle

civilization
China
land development
1 Citations
Finches
corticosterone
Corticosterone
Birds
plant response
1 Citations

Circulating tumor DNA analysis in patients with cancer: American society of clinical oncology and college of American pathologists joint review

Merker, J. D., Oxnard, G. R., Compton, C., Diehn, M., Hurley, P., Lazar, A. J., Lindeman, N., Lockwood, C. M., Rai, A. J., Schilsky, R. L., Tsimberidou, A. M., Vasalos, P., Billman, B. L., Oliver, T. K., Bruinooge, S. S., Hayes, D. F. & Turner, N. C., Oct 1 2018, In : Archives of Pathology and Laboratory Medicine. 142, 10, p. 1242-1253 12 p.

Research output: Contribution to journalReview article

Medical Oncology
DNA
Neoplasms
Pathologists
Edetic Acid
29 Citations

Circulating tumor DNA analysis in patients with cancer: American society of clinical oncology and college of American pathologists joint review

Merker, J. D., Oxnard, G. R., Compton, C., Diehn, M., Hurley, P., Lazar, A. J., Lindeman, N., Lockwood, C. M., Rai, A. J., Schilsky, R. L., Tsimberidou, A. M., Vasalos, P., Billman, B. L., Oliver, T. K., Bruinooge, S. S., Hayes, D. F. & Turner, N. C., Jun 1 2018, In : Journal of Clinical Oncology. 36, 16, p. 1631-1641 11 p.

Research output: Contribution to journalReview article

Medical Oncology
DNA
Neoplasms
Pathologists
Edetic Acid

Clade and strain specific contributions of Synechococcus and Prochlorococcus to carbon export in the Sargasso Sea

De Martini, F., Neuer, S., Hamill, D., Robidart, J. & Lomas, M. W., Jan 1 2018, (Accepted/In press) In : Limnology and Oceanography.

Research output: Contribution to journalArticle

Sargasso Sea
Prochlorococcus
Synechococcus
particulate organic carbon
carbon flux
1 Citations

CO2 transport, variability, and budget over the Southern California Air Basin using the high-resolution WRF-VPRM model during the CalNex 2010 campaign

Park, C., Gerbig, C., Newman, S., Ahmadov, R., Feng, S., Gurney, K., Carmichael, G. R., Park, S. Y., Lee, H. W., Goulden, M., Stutz, J., Peischl, J. & Ryerson, T., Jun 1 2018, In : Journal of Applied Meteorology and Climatology. 57, 6, p. 1337-1352 16 p.

Research output: Contribution to journalArticle

photosynthesis
respiration
weather
vegetation
air
2 Citations

Coalescent processes with skewed offspring distributions and nonequilibrium demography

Matuszewski, S., Hildebrandt, M. E., Achaz, G. & Jensen, J., Jan 1 2018, In : Genetics. 208, 1, p. 323-338 16 p.

Research output: Contribution to journalArticle

Demography
Genealogy and Heraldry
Population Growth
Ecology
Sequence Analysis

Colony-level non-associative plasticity of alarm responses in the stingless honey bee, Tetragonisca angustula

Jernigan, C. M., Birgiolas, J., McHugh, C., Roubik, D. W., Wcislo, W. T. & Smith, B., Mar 1 2018, In : Behavioral Ecology and Sociobiology. 72, 3, 58.

Research output: Contribution to journalArticle

Tetragonisca angustula
alarm pheromones
honey
pheromone
bee