Knowledge Enterprise (KE)

Research Output

2020

Accumbens neuroimmune signaling and dysregulation of astrocytic glutamate transport underlie conditioned nicotine-seeking behavior

Namba, M. D., Kupchik, Y. M., Spencer, S. M., Garcia-Keller, C., Goenaga, J. G., Powell, G. L., Vicino, I. A., Hogue, I. B. & Gipson, C. D., Sep 1 2020, In : Addiction Biology. 25, 5, e12797.

Research output: Contribution to journalArticle

3 Scopus citations

A framework for understanding Mo isotope records of Archean and Paleoproterozoic Fe- and Mn-rich sedimentary rocks: Insights from modern marine hydrothermal Fe-Mn oxides

Goto, K. T., Sekine, Y., Shimoda, G., Hein, J. R., Aoki, S., Ishikawa, A., Suzuki, K., Gordon, G. W. & Anbar, A. D., Jul 1 2020, In : Geochimica et Cosmochimica Acta. 280, p. 221-236 16 p.

Research output: Contribution to journalArticle

A Kinesin-3 recruitment complex facilitates axonal sorting of enveloped alpha herpesvirus capsids

Scherer, J., Hogue, I. B., Yaffe, Z. A., Tanneti, N. S., Winer, B. Y., Vershinin, M. & Enquist, L. W., 2020, In : PLoS Pathogens. 16, 1, e1007985.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2 Scopus citations

Alterations in innate immunity and epithelial cell differentiation are the molecular pillars of hidradenitis suppurativa

Zouboulis, C. C., Nogueira da Costa, A., Makrantonaki, E., Hou, X. X., Almansouri, D., Dudley, J. T., Edwards, H., Readhead, B., Balthasar, O., Jemec, G. B. E., Bonitsis, N. G., Nikolakis, G., Trebing, D., Zouboulis, K. C. & Hossini, A. M., Apr 1 2020, In : Journal of the European Academy of Dermatology and Venereology. 34, 4, p. 846-861 16 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

A membrane-biofilm system for sulfate conversion to elemental sulfur in mining-influenced waters

Schwarz, A., Suárez, J. I., Aybar, M., Nancucheo, I., Martínez, P. & Rittmann, B. E., Oct 20 2020, In : Science of the Total Environment. 740, 140088.

Research output: Contribution to journalArticle

An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020)

Holland, L. R. A., Kaelin, E. A., Maqsood, R., Estifanos, B., Wu, L. I., Varsani, A., Halden, R. U., Hogue, B. G., Scotch, M. & Lim, E. S., Jul 1 2020, In : Journal of virology. 94, 14

Research output: Contribution to journalLetter

Open Access
5 Scopus citations

An intrinsic FRET sensor of protein-ligand interactions

Gleason, P. R., Kelly, P. I., Grisingher, D. W. & Mills, J. H., Jun 7 2020, In : Organic and Biomolecular Chemistry. 18, 21, p. 4079-4084 6 p.

Research output: Contribution to journalArticle

A novel divergent geminivirus identified in asymptomatic New World Cactaceae plants

Fontenele, R. S., Salywon, A. M., Majure, L. C., Cobb, I. N., Bhaskara, A., Avalos-Calleros, J. A., Argüello-Astorga, G. R., Schmidlin, K., Khalifeh, A., Smith, K., Schreck, J., Lund, M. C., Köhler, M., Wojciechowski, M. F., Hodgson, W. C., Puente-Martinez, R., van Doorslaer, K., Kumari, S., Vernière, C., Filloux, D. & 6 others, Roumagnac, P., Lefeuvre, P., Ribeiro, S. G., Kraberger, S., Martin, D. P. & Varsani, A., Apr 2020, In : Viruses. 12, 4, 398.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant

Orr, A. J., Padovan, A., Kainer, D., Külheim, C., Bromham, L., Bustos-Segura, C., Foley, W., Haff, T., Hsieh, J. F., Morales-Suarez, A., Cartwright, R. A. & Lanfear, R., Mar 11 2020, In : Proceedings of the Royal Society B: Biological Sciences. 287, 1922, 20192364.

Research output: Contribution to journalArticle

Open Access

A Theoretical Framework for Evolutionary Cell Biology

Lynch, M. & Trickovic, B., Mar 27 2020, In : Journal of molecular biology. 432, 7, p. 1861-1879 19 p.

Research output: Contribution to journalReview article

Open Access
Open Access

Author Correction: The vertical distribution and biological transport of marine microplastics across the epipelagic and mesopelagic water column (Scientific Reports, (2019), 9, 1, (7843), 10.1038/s41598-019-44117-2)

Choy, C. A., Robison, B. H., Gagne, T. O., Erwin, B., Firl, E., Halden, R. U., Hamilton, J. A., Katija, K., Lisin, S. E., Rolsky, C. & Van Houtan, K. S., Dec 1 2020, In : Scientific reports. 10, 1, 620.

Research output: Contribution to journalComment/debate

Open Access

Autologous Transplantation Using Donor Leukocytes Loaded Ex Vivo with Oncolytic Myxoma Virus Can Eliminate Residual Multiple Myeloma

Villa, N. Y., Rahman, M. M., Mamola, J., D'Isabella, J., Goras, E., Kilbourne, J., Lowe, K., Daggett-Vondras, J., Torres, L., Christie, J., Appel, N., Cox, A. L., Kim, J. B. & McFadden, G., Sep 25 2020, In : Molecular Therapy - Oncolytics. 18, p. 171-188 18 p.

Research output: Contribution to journalArticle

Open Access

Binomial nomenclature for virus species: a consultation

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Dutilh, B. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & Davison, A. J., Feb 1 2020, In : Archives of virology. 165, 2, p. 519-525 7 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Change in 21-gene Recurrence Score result after exposure to neo-adjuvant endocrine therapy in patients with operable breast cancer

Hilal, T., Mi, L., Ertz-Archambault, N. M., Almquist, D. R., Anderson, K. S., Gray, R. J., Pockaj, B. A. & Northfelt, D. W., Jul 1 2020, In : Breast Journal. 26, 7, p. 1449-1451 3 p.

Research output: Contribution to journalComment/debate

Choline as a prevention for Alzheimer's disease

Velazquez, R., Winslow, W. & Mifflin, M. A., Feb 9 2020, In : Aging. 12, 3, p. 2026-2027 2 p.

Research output: Contribution to journalArticle

Codelivery of improved immune complex and virus-like particle vaccines containing Zika virus envelope domain III synergistically enhances immunogenicity

Diamos, A. G., Pardhe, M. D., Sun, H., Hunter, J. G. L., Mor, T., Meador, L., Kilbourne, J., Chen, Q. & Mason, H. S., Apr 16 2020, In : Vaccine. 38, 18, p. 3455-3463 9 p.

Research output: Contribution to journalArticle

Open Access

Coinfections of novel polyomavirus, anelloviruses and a recombinant strain of myxoma virus-MYXV-tol identified in Iberian hares

Ägueda-Pinto, A., Kraberger, S., Lund, M. C., Gortázar, C., McFadden, G., Varsani, A. & Esteves, P. J., Jan 1 2020, In : Viruses. 12, 3, 340.

Research output: Contribution to journalArticle

Open Access

Comparison of personal and shared frameshift neoantigen vaccines in a mouse mammary cancer model

Peterson, M., Murphy, S. N., Lainson, J., Zhang, J., Shen, L., Diehnelt, C. & Johnston, S. A., May 5 2020, In : BMC Immunology. 21, 1, 25.

Research output: Contribution to journalArticle

Open Access

Complex assemblies and crystals guided by DNA

Jiang, S., Zhang, F. & Yan, H., Jul 1 2020, In : Nature materials. 19, 7, p. 694-700 7 p.

Research output: Contribution to journalComment/debate

Conductance and Configuration of Molecular Gold-Water-Gold Junctions under Electric Fields

Xiang, L., Zhang, P., Liu, C., He, X., Li, H. B., Li, Y., Wang, Z., Hihath, J., Kim, S. H., Beratan, D. N. & Tao, N., Jul 1 2020, In : Matter. 3, 1, p. 166-179 14 p.

Research output: Contribution to journalArticle

Open Access

Considering mutational meltdown as a potential SARS-CoV-2 treatment strategy

Jensen, J. D. & Lynch, M., May 1 2020, In : Heredity. 124, 5, p. 619-620 2 p.

Research output: Contribution to journalComment/debate

Open Access

Correction to: Binomial nomenclature for virus species: a consultation (Archives of Virology, (2020), 165, 2, (519-525), 10.1007/s00705-019-04477-6)

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Dutilh, B. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & Davison, A. J., May 1 2020, In : Archives of virology. 165, 5, p. 1263-1264 2 p.

Research output: Contribution to journalComment/debate

Open Access

Cressdnaviricota: a Virus Phylum Unifying Seven Families of Rep-Encoding Viruses with Single-Stranded, Circular DNA Genomes

Krupovic, M., Varsani, A., Kazlauskas, D., Breitbart, M., Delwart, E., Rosario, K., Yutin, N., Wolf, Y. I., Harrach, B., Zerbini, F. M., Dolja, V. V., Kuhn, J. H. & Koonin, E. V., Jun 1 2020, In : Journal of virology. 94, 12

Research output: Contribution to journalLetter

Deep Active Learning for Image Regression

Ranganathan, H., Venkateswara, H., Chakraborty, S. & Panchanathan, S., Jan 1 2020, Advances in Intelligent Systems and Computing. Springer, p. 113-135 23 p. (Advances in Intelligent Systems and Computing; vol. 1098).

Research output: Chapter in Book/Report/Conference proceedingChapter

Depomedroxyprogesterone acetate therapy for hot flashes in survivors of breast cancer: no unfavorable impact on recurrence and survival

Ertz-Archambault, N. M., Rogoff, L. B., Kosiorek, H. E., Ernst, B. J., Anderson, K. S., Pockaj, B. A., Gray, R. J. & Northfelt, D. W., May 1 2020, In : Supportive Care in Cancer. 28, 5, p. 2139-2143 5 p.

Research output: Contribution to journalArticle

Detection of Molecules and Charges with a Bright Field Optical Microscope

Zhu, H., Ma, G., Wan, Z., Wang, H. & Tao, N., Apr 21 2020, In : Analytical chemistry. 92, 8, p. 5904-5909 6 p.

Research output: Contribution to journalArticle

Discovery of a New TLR Gene and Gene Expansion Event through Improved Desert Tortoise Genome Assembly with Chromosome-Scale Scaffolds

Dolby, G. A., Morales, M., Webster, T. H., Denardo, D. F., Wilson, M. A., Kusumi, K. & Piontkivska, H., Feb 8 2020, In : Genome biology and evolution. 12, 2, p. 3917-3925 9 p.

Research output: Contribution to journalArticle

Open Access

Discovery of several thousand highly diverse circular DNA viruses

Tisza, M. J., Pastrana, D. V., Welch, N. L., Stewart, B., Peretti, A., Starrett, G. J., Pang, Y. Y. S., Krishnamurthy, S. R., Pesavento, P. A., McDermott, D. H., Murphy, P. M., Whited, J. L., Miller, B., Brenchley, J., Rosshart, S. P., Rehermann, B., Doorbar, J., Ta’ala, B. A., Pletnikova, O., Troncoso, J. C. & 6 others, Resnick, S. M., Bolduc, B., Sullivan, M. B., Varsani, A., Segall, A. M. & Buck, C. B., Feb 2020, In : eLife. 9, e51971.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Do infections have a role in the pathogenesis of Alzheimer disease?

Itzhaki, R. F., Golde, T. E., Heneka, M. T. & Readhead, B., Apr 1 2020, In : Nature Reviews Neurology. 16, 4, p. 193-197 5 p.

Research output: Contribution to journalReview article

Double-component diazeniumdiolate derivatives as anti-cancer agents

Ji, X., Chen, Q., Arutla, V., Khdour, O., Hu, Q. Y. & Chen, S., Apr 15 2020, In : Bioorganic and Medicinal Chemistry. 28, 8, 115405.

Research output: Contribution to journalArticle

Electronic Conductance Resonance in Non-Redox-Active Proteins

Zhang, B., Song, W., Brown, J., Nemanich, R. & Lindsay, S., Apr 1 2020, In : Journal of the American Chemical Society. 142, 13, p. 6432-6438 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Emerging Frontiers in the Study of Molecular Evolution

Liberles, D. A., Chang, B., Geiler-Samerotte, K., Goldman, A., Hey, J., Kaçar, B., Meyer, M., Murphy, W., Posada, D. & Storfer, A., Apr 1 2020, In : Journal of Molecular Evolution. 88, 3, p. 211-226 16 p.

Research output: Contribution to journalEditorial

Open Access

Encoding quantized fluorescence states with fractal DNA frameworks

Li, J., Dai, J., Jiang, S., Xie, M., Zhai, T., Guo, L., Cao, S., Xing, S., Qu, Z., Zhao, Y., Wang, F., Yang, Y., Liu, L., Zuo, X., Wang, L., Yan, H. & Fan, C., Dec 1 2020, In : Nature communications. 11, 1, 2185.

Research output: Contribution to journalArticle

Open Access

Engineering an Enzyme for Direct Electrical Monitoring of Activity

Zhang, B., Deng, H., Mukherjee, S., Song, W., Wang, X. & Lindsay, S., Feb 25 2020, In : ACS nano. 14, 2, p. 1360-1368 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs

Nagaratnam, N., Tang, Y., Botha, S., Saul, J., Li, C., Hu, H., Zaare, S., Hunter, M., Lowry, D., Weierstall, U., Zatsepin, N., Spence, J. C. H., Qiu, J., LaBaer, J., Fromme, P. & Martin-Garcia, J. M., Jun 1 2020, In : Acta Crystallographica Section F:Structural Biology Communications. 76, p. 278-289 12 p.

Research output: Contribution to journalArticle

Open Access

Enhancing antitumor efficacy of nucleoside analog 5-fluorodeoxyuridine on her2-overexpressing breast cancer by affibody-engineered DNA nanoparticle

Zhang, C., Han, M., Zhang, F., Yang, X., Du, J., Zhang, H., Li, W. & Chen, S., 2020, In : International journal of nanomedicine. 15, p. 885-900 16 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Enhancing supervised bug localization with metadata and stack-trace

Wang, Y., Yao, Y., Tong, H., Huo, X., Li, M., Xu, F. & Lu, J., Jan 1 2020, (Accepted/In press) In : Knowledge and Information Systems.

Research output: Contribution to journalArticle

Evaluating performance, degradation, and release behavior of a nanoform pigmented coating after natural and accelerated weathering

Lankone, R. S., Ruggiero, E., Goodwin, D. G., Vilsmeier, K., Mueller, P., Pulbere, S., Challis, K., Bi, Y., Westerhoff, P., Ranville, J., Fairbrother, D. H., Sung, L. P. & Wohlleben, W., Jan 2020, In : NanoImpact. 17, 100199.

Research output: Contribution to journalArticle

Open Access

Evaluation of oxidative stress in biological samples using the thiobarbituric acid reactive substances assay

Aguilar Diaz De Leon, J. & Borges, C. R., May 2020, In : Journal of Visualized Experiments. 2020, 159, e61122.

Research output: Contribution to journalArticle

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies

Pacheco-Forés, S. I., Gordon, G. W. & Knudson, K. J., Jan 1 2020, In : PloS one. 15, 2, e0229687.

Research output: Contribution to journalArticle

Open Access

Ex Vivo Virotherapy with Myxoma Virus to Treat Cancer

Villa, N. Y., Franco, L. S. & McFadden, G., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 2058).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fear-based aggression and its relationship to corticosterone responsiveness in three species of python

Brashears, J. A., Fokidis, H. B. & DeNardo, D. F., Apr 1 2020, In : General and Comparative Endocrinology. 289, 113374.

Research output: Contribution to journalArticle

First report of barley yellow dwarf virus in maize in Tunisia

Hamdi, I., Najar, A., Ghanem, H. B., Varsani, A. & Jemmali, A., Feb 1 2020, In : Journal of Plant Pathology. 102, 1, 1 p.

Research output: Contribution to journalArticle

Open Access

Frequent cross-species transmissions of foamy virus between domestic and wild felids

Kraberger, S., Fountain-Jones, N. M., Gagne, R. B., Malmberg, J., Dannemiller, N. G., Logan, K., Alldredge, M., Varsani, A., Crooks, K. R., Craft, M., Carver, S. & Vandewoude, S., Jan 17 2020, In : Virus Evolution. 6, 1, vez058.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Genome characterization of cetaceanpox virus from a managed Indo-Pacific bottlenose dolphin (Tursiops aduncus)

Rodrigues, T. C. S., Subramaniam, K., Varsani, A., McFadden, G., Schaefer, A. M., Bossart, G. D., Romero, C. H. & Waltzek, T. B., Mar 2020, In : Virus research. 278, 197861.

Research output: Contribution to journalArticle

Global Organization and Proposed Megataxonomy of the Virus World

Koonin, E. V., Dolja, V. V., Krupovic, M., Varsani, A., Wolf, Y. I., Yutin, N., Zerbini, F. M. & Kuhn, J. H., May 20 2020, In : Microbiology and molecular biology reviews : MMBR. 84, 2

Research output: Contribution to journalReview article

7 Scopus citations

Graphite nanoparticle addition to fertilizers reduces nitrate leaching in growth of lettuce (: Lactuca sativa)

Pandorf, M., Pourzahedi, L., Gilbertson, L., Lowry, G. V., Herckes, P. & Westerhoff, P., Jan 1 2020, In : Environmental Science: Nano. 7, 1, p. 127-138 12 p.

Research output: Contribution to journalArticle

1 Scopus citations