Knowledge Enterprise (KE)

Research Output

2020

An expanded shale δ98Mo record permits recurrent shallow marine oxygenation during the Neoarchean

Ostrander, C. M., Kendall, B., Olson, S. L., Lyons, T. W., Gordon, G. W., Romaniello, S. J., Zheng, W., Reinhard, C. T., Roy, M. & Anbar, A. D., Jan 20 2020, In : Chemical Geology. 532, 119391.

Research output: Contribution to journalArticle

Open Access

Bioreduction of nitrate in high-sulfate water using a hydrogen-based membrane biofilm reactor equipped with a separate carbon dioxide module

Xia, S., Wu, C., Yang, X., Zhou, Y., Zhou, L., Ran, Y. & Rittmann, B. E., Apr 1 2020, In : Chemical Engineering Journal. 385, 123831.

Research output: Contribution to journalArticle

Choline as a prevention for Alzheimer's disease

Velazquez, R., Winslow, W. & Mifflin, M. A., Feb 9 2020, In : Aging. 12, 3, p. 2026-2027 2 p.

Research output: Contribution to journalArticle

Correction to: Binomial nomenclature for virus species: a consultation (Archives of Virology, (2020), 165, 2, (519-525), 10.1007/s00705-019-04477-6)

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Dutilh, B. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & Davison, A. J., Jan 1 2020, (Accepted/In press) In : Archives of virology.

Research output: Contribution to journalComment/debate

Open Access

Deep Active Learning for Image Regression

Ranganathan, H., Venkateswara, H., Chakraborty, S. & Panchanathan, S., Jan 1 2020, Advances in Intelligent Systems and Computing. Springer, p. 113-135 23 p. (Advances in Intelligent Systems and Computing; vol. 1098).

Research output: Chapter in Book/Report/Conference proceedingChapter

Dynamic self-assembly of detonation nanodiamond in water

Chang, S. L. Y., Reineck, P., Williams, D., Bryant, G., Opletal, G., El-Demrdash, S. A., Chiu, P. L., Osawa, E., Barnard, A. S. & Dwyer, C., Mar 7 2020, In : Nanoscale. 12, 9, p. 5363-5367 5 p.

Research output: Contribution to journalArticle

Effect of ultra-violet exposure on production of mycosporine-like amino acids and lipids by Lyngbya purpurem

Chandra, R., Pons-Faudoa, F. P., Parra Saldívar, R. & Rittmann, B. E., Mar 2020, In : Biomass and Bioenergy. 134, 105475.

Research output: Contribution to journalArticle

Enhancing supervised bug localization with metadata and stack-trace

Wang, Y., Yao, Y., Tong, H., Huo, X., Li, M., Xu, F. & Lu, J., Jan 1 2020, (Accepted/In press) In : Knowledge and Information Systems.

Research output: Contribution to journalArticle

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies

Pacheco-Forés, S. I., Gordon, G. W. & Knudson, K. J., Jan 1 2020, In : PloS one. 15, 2, e0229687.

Research output: Contribution to journalArticle

Open Access

Ex Vivo Virotherapy with Myxoma Virus to Treat Cancer

Villa, N. Y., Franco, L. S. & McFadden, G., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 2058).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome characterization of cetaceanpox virus from a managed Indo-Pacific bottlenose dolphin (Tursiops aduncus)

Rodrigues, T. C. S., Subramaniam, K., Varsani, A., McFadden, G., Schaefer, A. M., Bossart, G. D., Romero, C. H. & Waltzek, T. B., Mar 2020, In : Virus research. 278, 197861.

Research output: Contribution to journalArticle

Global Organization and Proposed Megataxonomy of the Virus World

Koonin, E. V., Dolja, V. V., Krupovic, M., Varsani, A., Wolf, Y. I., Yutin, N., Zerbini, F. M. & Kuhn, J. H., May 20 2020, In : Microbiology and molecular biology reviews : MMBR. 84, 2

Research output: Contribution to journalReview article

Graphite nanoparticle addition to fertilizers reduces nitrate leaching in growth of lettuce (: Lactuca sativa)

Pandorf, M., Pourzahedi, L., Gilbertson, L., Lowry, G. V., Herckes, P. & Westerhoff, P., Jan 1 2020, In : Environmental Science: Nano. 7, 1, p. 127-138 12 p.

Research output: Contribution to journalArticle

Happy 5th Anniversary for ACS Sensors

Gooding, J. J., Mazur, A., Bakker, E., Kelley, S., Tao, N., Sailor, M., Merkx, M., Mao, L. & Clark, H., Jan 24 2020, In : ACS Sensors. 5, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Open Access

High Level Production of Monoclonal Antibodies Using an Optimized Plant Expression System

Diamos, A. G., Hunter, J. G. L., Pardhe, M. D., Rosenthal, S. H., Sun, H., Foster, B. C., DiPalma, M. P., Chen, Q. & Mason, H. S., Jan 17 2020, In : Frontiers in Bioengineering and Biotechnology. 7, 472.

Research output: Contribution to journalArticle

Open Access

How nitrate affects perchlorate reduction in a methane-based biofilm batch reactor

Lv, P. L., Shi, L. D., Dong, Q. Y., Rittmann, B. & Zhao, H. P., Mar 15 2020, In : Water Research. 171, 115397.

Research output: Contribution to journalArticle

Immune protection is dependent on the gut microbiome in a lethal mouse gammaherpesviral infection

Yaron, J. R., Ambadapadi, S., Zhang, L., Chavan, R. N., Tibbetts, S. A., Keinan, S., Varsani, A., Maldonado, J., Kraberger, S., Tafoya, A. M., Bullard, W. L., Kilbourne, J., Stern-Harbutte, A., Krajmalnik-Brown, R., Munk, B. H., Koppang, E. O., Lim, E. S. & Lucas, A. R., Dec 1 2020, In : Scientific reports. 10, 1, 2371.

Research output: Contribution to journalArticle

Open Access

Inference of historical population-size changes with allele-frequency data

Lynch, M., Haubold, B., Pfaffelhuber, P. & Maruki, T., Jan 1 2020, In : G3: Genes, Genomes, Genetics. 10, 1, p. 211-223 13 p.

Research output: Contribution to journalArticle

Open Access

Influence of operating conditions on sulfate reduction from real mining process water by membrane biofilm reactors

Suárez, J. I., Aybar, M., Nancucheo, I., Poch, B., Martínez, P., Rittmann, B. E. & Schwarz, A., Apr 1 2020, In : Chemosphere. 244, 1 p.

Research output: Contribution to journalArticle

Lessons from within: redesigning higher education

Hale, A., Archambault, L. & Wenrick, L., Jan 1 2020, (Accepted/In press) In : Development and Learning in Organizations.

Research output: Contribution to journalComment/debate

Open Access

Magnetic nanoparticle recovery device (MagNERD) enables application of iron oxide nanoparticles for water treatment

Powell, C. D., Atkinson, A. J., Ma, Y., Marcos-Hernandez, M., Villagran, D., Westerhoff, P. & Wong, M. S., Jan 1 2020, In : Journal of Nanoparticle Research. 22, 2, 48.

Research output: Contribution to journalArticle

Materials matter in phosphorus sustainability

Jones, J. L., Yingling, Y. G., Reaney, I. M. & Westerhoff, P., Jan 1 2020, In : MRS Bulletin. 45, 1, p. 7-10 4 p.

Research output: Contribution to journalComment/debate

Open Access

Mathematical Modeling and Analysis of Wastewater Treatment Plant Using the Cannibal Process

Xiong, J., Young, M. N., Marcus, A. K., Van Ginkel, S. W. & Rittmann, B. E., Feb 1 2020, In : Journal of Environmental Engineering (United States). 146, 2, 04019108.

Research output: Contribution to journalArticle

Mesenchymal stem cells as carriers for systemic delivery of oncolytic viruses

Hadryś, A., Sochanik, A., McFadden, G. & Jazowiecka-Rakus, J., May 5 2020, In : European Journal of Pharmacology. 874, 172991.

Research output: Contribution to journalReview article

Open Access

Missing information imputation for disease-dedicated social networks with heterogeneous auxiliary data

Liu, X., He, J., Min, W. & Yang, H., Jan 1 2020, (Accepted/In press) In : IISE Transactions on Healthcare Systems Engineering.

Research output: Contribution to journalArticle

Modeling Trichloroethene Reduction, Methanogenesis, and Homoacetogenesis in a H 2 -Based Biofilm

Wang, B., Krajmalnik-Brown, R., Zhou, C., Luo, Y., Rittmann, B. E. & Tang, Y., Feb 1 2020, In : Journal of Environmental Engineering (United States). 146, 2, 04019115.

Research output: Contribution to journalArticle

Novel nanovirus and associated alphasatellites identified in milk vetch plants with chlorotic dwarf disease in Iran

Hassan-Sheikhi, P., Heydarnejad, J., Massumi, H., Kraberger, S. & Varsani, A., Jan 15 2020, In : Virus research. 276, 1 p.

Research output: Contribution to journalArticle

Oncolytic Viruses and the Immune System: The Dynamic Duo

Lemos de Matos, A., Franco, L. S. & McFadden, G., Jun 12 2020, In : Molecular Therapy - Methods and Clinical Development. 17, p. 349-358 10 p.

Research output: Contribution to journalReview article

Open Access
1 Scopus citations

Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators

Hong, F., Ma, D., Wu, K., Mina, L. A., Luiten, R. C., Liu, Y., Yan, H. & Green, A. A., Mar 5 2020, In : Cell. 180, 5, p. 1018-1032.e16

Research output: Contribution to journalArticle

Open Access

Roles of entropic and solvent damping forces in the dynamics of polymer tethered nanoparticles and implications for single molecule sensing

Ma, G., Wan, Z., Zhu, H. & Tao, N., Jan 1 2020, In : Chemical Science. 11, 5, p. 1283-1289 7 p.

Research output: Contribution to journalArticle

Open Access

Suppression of water-bloom cyanobacterium Microcystis aeruginosa by algaecide hydrogen peroxide maximized through programmed cell death

Zhou, T., Cao, H., Zheng, J., Teng, F., Wang, X., Lou, K., Zhang, X. & Tao, Y., Jul 5 2020, In : Journal of Hazardous Materials. 393, 122394.

Research output: Contribution to journalArticle

SV40 large T antigen is not responsible for the loss of STING in 293T cells but can inhibit cGAS-STING interferon induction

Reus, J. B., Trivino-Soto, G. S., Wu, L. I., Kokott, K. & Lim, E. S., Jan 1 2020, In : Viruses. 12, 2, v12020137.

Research output: Contribution to journalArticle

Open Access

Symptom evolution following the emergence of maize streak virus

Monjane, A. L., Dellicour, S., Hartnady, P., Oyeniran, K. A., Owor, B. E., Bezeidenhout, M., Linderme, D., Syed, R. A., Donaldson, L., Murray, S., Rybicki, E. P., Kvarnheden, A., Yazdkhasti, E., Lefeuvre, P., Froissart, R., Roumagnac, P., Shepherd, D. N., Harkins, G. W., Suchard, M. A., Lemey, P. & 2 others, Varsani, A. & Martin, D. P., Jan 2020, In : eLife. 9, e51984.

Research output: Contribution to journalArticle

Open Access

The complex puzzle of dietary silver nanoparticles, mucus and microbiota in the gut

Bi, Y., Marcus, A. K., Robert, H., Krajmalnik-Brown, R., Rittmann, B. E., Westerhoff, P., Ropers, M. H. & Mercier-Bonin, M., Jan 1 2020, (Accepted/In press) In : Journal of Toxicology and Environmental Health - Part B: Critical Reviews.

Research output: Contribution to journalArticle

Towards a simultaneous combination of ozonation and biodegradation for enhancing tetracycline decomposition and toxicity elimination

Su, Y., Wang, X., Dong, S., Fu, S., Zhou, D. & Rittmann, B. E., May 2020, In : Bioresource Technology. 304, 123009.

Research output: Contribution to journalArticle

Unveiling the deformation behavior and strengthening mechanisms of Al3BC/Al composites via in-situ micropillar compression

Zhao, Y., Singaravelu, A. S. S., Ma, X., Zhang, Q., Chang, S. L. Y., Liu, X. & Chawla, N., May 15 2020, In : Journal of Alloys and Compounds. 823, 153842.

Research output: Contribution to journalArticle

Virus discovery in desert tortoise fecal samples: Novel circular single-stranded DNA viruses

Orton, J. P., Morales, M., Fontenele, R. S., Schmidlin, K., Kraberger, S., Leavitt, D. J., Webster, T. H., Wilson, M. A., Kusumi, K., Dolby, G. A. & Varsani, A., Jan 1 2020, In : Viruses. 12, 2, v12020143.

Research output: Contribution to journalArticle

Open Access
2019

27.5 A 91%-Efficiency Envelope-Tracking Modulator Using Hysteresis-Controlled Three-Level Switching Regulator and Slew-Rate-Enhanced Linear Amplifier for LTE-80MHz Applications

Mahmoudidaryan, P., Mandal, D., Bakkaloglu, B. & Kiaei, S., Mar 6 2019, 2019 IEEE International Solid-State Circuits Conference, ISSCC 2019. Institute of Electrical and Electronics Engineers Inc., p. 428-430 3 p. 8662305. (Digest of Technical Papers - IEEE International Solid-State Circuits Conference; vol. 2019-February).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

60Co gamma ray damage in homoepitaxial β-Ga2O3 Schottky rectifiers

Yang, J., Koller, G. J., Fares, C., Ren, F., Pearton, S. J., Bae, J., Kim, J. & Smith, D., Jan 1 2019, In : ECS Journal of Solid State Science and Technology. 8, 7, p. Q3041-Q3045

Research output: Contribution to journalArticle

Open Access

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

3 Scopus citations

A broader view on jamming: from spring networks to circle packings

F. Hagh, V., Corwin, E. I., Stephenson, K. & Thorpe, M., Jan 1 2019, In : Soft Matter. 15, 15, p. 3076-3084 9 p.

Research output: Contribution to journalArticle

Acclimation of nitrifying biomass to phenol leads to persistent resistance to inhibition

Zou, S., Yan, N., Zhang, C., Zhou, Y., Wu, X., Wang, J., Liu, Y., Zhang, Y. & Rittmann, B., Nov 25 2019, In : Science of the Total Environment. 693, 133622.

Research output: Contribution to journalArticle

Adaptive MTD Security using Markov Game Modeling

Chowdhary, A., Sengupta, S., Alshamrani, A., Huang, D. & Sabur, A., Apr 8 2019, 2019 International Conference on Computing, Networking and Communications, ICNC 2019. Institute of Electrical and Electronics Engineers Inc., p. 577-581 5 p. 8685647. (2019 International Conference on Computing, Networking and Communications, ICNC 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A. & 2 others, Zerbini, F. M. & Davison, A. J., Jan 1 2019, (Accepted/In press) In : Archives of Virology.

Research output: Contribution to journalArticle

16 Scopus citations

A Deep Q-Learning Approach for Dynamic Management of Heterogeneous Processors

Gupta, U., Mandal, S. K., Mao, M., Chakrabarti, C. & Ogras, U., Jan 1 2019, (Accepted/In press) In : IEEE Computer Architecture Letters.

Research output: Contribution to journalArticle

6 Scopus citations

A dielectric-defined lateral heterojunction in a monolayer semiconductor

Utama, M. I. B., Kleemann, H., Zhao, W., Ong, C. S., da Jornada, F. H., Qiu, D. Y., Cai, H., Li, H., Kou, R., Zhao, S., Wang, S., Watanabe, K., Taniguchi, T., Tongay, S., Zettl, A., Louie, S. G. & Wang, F., Feb 1 2019, In : Nature Electronics. 2, 2, p. 60-65 6 p.

Research output: Contribution to journalArticle

10 Scopus citations

ADMIRING: Adversarial multi-network mining

Zhou, Q., Li, L., Cao, N., Ying, L. & Tong, H., Nov 2019, Proceedings - 19th IEEE International Conference on Data Mining, ICDM 2019. Wang, J., Shim, K. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1522-1527 6 p. 8970779. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2019-November).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A dopamine-responsive signal transduction controls transcription of salmonella enterica serovar typhimurium virulence genes

Yang, D., Kong, Y., Sun, W., Kong, W. & Shi, Y., Mar 1 2019, In : mBio. 10, 2, e02772-18.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations