IAFSE-ECEE: Biosignatures Discovery Automation, Center for

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  • 2017

    Automatic polyp detection in colonoscopy videos

    Yuan, Z., Izadyyazdanabadi, M., Mokkapati, D., Panvalkar, R., Shin, J. Y., Tajbakhsh, N., Gurudu, S. & Liang, J., 2017, Medical Imaging 2017: Image Processing. Angelini, E. D., Styner, M. A. & Angelini, E. D. (eds.). SPIE, 101332K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10133).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Fine-tuning convolutional neural networks for biomedical image analysis: Actively and incrementally

    Zhou, Z., Shin, J., Zhang, L., Gurudu, S., Gotway, M. & Liang, J., Nov 6 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. Institute of Electrical and Electronics Engineers Inc., p. 4761-4772 12 p. (Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    166 Scopus citations
  • 2016

    Automating carotid intima-media thickness video interpretation with convolutional neural networks

    Shin, J. Y., Tajbakhsh, N., Todd Hurst, R., Kendall, C. B. & Liang, J., 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2016. IEEE Computer Society, Vol. 2016-January. p. 2526-2535 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    28 Scopus citations
  • 2014

    DEEP-well microfluidics for arrayed colorimetric LAMP analysis

    Martineau, R. L., Ci, S., Houkal, J., Gao, W., Chao, S-H. & Meldrum, D., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 1009-1011 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Live single cell rotation using hydrodynamic microvortex flow and optical trapping

    Shetty, R. M., Myers, J. R., Teller, W. L., Shabilla, A., Smith, D., Houkal, J., Vela, J., Chao, S-H., Johnson, R. H., Kelbauskas, L., Wang, H. & Meldrum, D., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 1545-1547 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Simple Rt-QPCR chip for single marine diatom cells

    Shi, X., Gao, W., Chao, S-H. & Meldrum, D., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 1924-1926 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Single cell metabolic profiling using multiplexed, photo-patterned fluorescence sensor arrays

    Song, G., Wang, K. C., Ueberroth, B., Lee, F., Zhang, L., Su, F., Zhu, H., Mei, Q., Chao, S-H., Kelbauskas, L., Tian, Y., Wang, H. & Meldrum, D., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 884-886 3 p. (18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2013

    Ad-hoc multi-hop underwater optical network for deep ocean monitoring

    Mora, A., Ganger, D., Wells, G., Zhang, J., Hu, X., Zhou, C., Richa, A. & Youngbull, C., 2013, OCEANS 2013 MTS/IEEE - San Diego: An Ocean in Common. IEEE Computer Society, 6741355

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Autonomous high throughput real time PCR platform for large scale environmental monitoring

    Ray, T., Hatch, A., Lintecum, K., Chao, S-H. & Youngbull, C., Aug 9 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. p. 85-88 4 p. (Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013; vol. 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Multiple sensor arrays for single cell metabolic analysis

    Song, G., Shetty, R. M., Zhu, H., Ashili, S., Zhang, L., Kim, G., Shabilla, A., Teller, W., Mei, Q., Kelbauskas, L., Tian, Y., Wang, H., Johnson, R. H. & Meldrum, D., Jan 1 2013, IEEE SENSORS 2013 - Proceedings. IEEE Computer Society, 6688453. (Proceedings of IEEE Sensors).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Rotation of cells and cell clusters in culture media for optical computed tomography

    Wang, H., Stanley, M., Elango, I. S., Shetty, R. M., Teller, W., Shabilla, A., Limsirichai, P., Zhu, H., Houkal, J., Smith, D., Chao, S-H., Kelbauskas, L., Johnson, R. H. & Meldrum, D., 2013, 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013. Chemical and Biological Microsystems Society, p. 1090-1092 3 p. (17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • 2012

    Conformal mapping of nuclei in 3D tomographic cell images to assess shape heterogeneity

    Nandakumar, V., An, X., Wang, Y., Johnson, R. & Meldrum, D., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 222-225 4 p. 6235524. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Static and transient response analysis of a piezoelectric actuator driven diaphragm pico-liter pump

    Anis, Y. & Meldrum, D., Oct 18 2012, 2012 4th IEEE RAS and EMBS International Conference on Biomedical Robotics and Biomechatronics, BioRob 2012. p. 652-656 5 p. 6290823. (Proceedings of the IEEE RAS and EMBS International Conference on Biomedical Robotics and Biomechatronics).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • 2011

    A novel method for multiparameter physiological phenotype characterization at the single-cell level

    Kelbauskas, L., Ashili, S., Houkal, J., Smith, D., Mohammadreza, A., Lee, K., Kumar, A., Anis, Y., Paulson, T., Youngbull, C., Tian, Y., Johnson, R., Holl, M. & Meldrum, D., 2011, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues IX. 79021Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7902).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Automated platform for multiparameter stimulus response studies of metabolic activity at the single-cell level

    Ashili, S. P., Kelbauskas, L., Houkal, J., Smith, D., Tian, Y., Youngbull, C., Zhu, H., Anis, Y. H., Hupp, M., Lee, K. B., Kumar, A. V., Vela, J., Shabilla, A., Johnson, R. H., Holl, M. R. & Meldrum, D., 2011, Microfluidics, BioMEMS, and Medical Microsystems IX. 79290S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7929).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Characterization of KMPR®1025 as a masking layer for deep reactive ion etching of fused silica

    Ray, T., Zhu, H., Elango, I. S. & Meldrum, D., Apr 13 2011, 2011 IEEE 24th International Conference on Micro Electro Mechanical Systems, MEMS 2011. p. 213-216 4 p. 5734399. (Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS)).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Single-cell real-time PCR: Direct process from cells to data

    Shi, X., Lin, L. I., Chen, S. Y., Gao, W., Chao, S-H., Zhang, W. & Meldrum, D., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 362-364 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2010

    High throughput micropatterning of optical oxygen sensor

    Zhu, H., Tian, Y., Bhushan, S., Su, F. & Meldrum, D., Dec 1 2010, IEEE Sensors 2010 Conference, SENSORS 2010. p. 2053-2056 4 p. 5690294. (Proceedings of IEEE Sensors).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Microfluidic device for transport and observation of single cells

    Merza, S. A., Posner, J. D., Anis, Y. H., Young, A. C., Johnson, R. H. & Meldrum, D., Jan 1 2010, Proceedings of the ASME International Mechanical Engineering Congress and Exposition 2009, IMECE 2009. PART C ed. American Society of Mechanical Engineers (ASME), p. 2213-2220 8 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings; vol. 9, no. PART C).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • 2009

    Forming self-assembled cell arrays and measuring the oxygen consumption rate of a single live cell

    Etzkorn, J. R., McQuaide, S. C., Anderson, J. B., Meldrum, D. & Parviz, B. A., 2009, TRANSDUCERS 2009 - 15th International Conference on Solid-State Sensors, Actuators and Microsystems. p. 2374-2377 4 p. 5285450. (TRANSDUCERS 2009 - 15th International Conference on Solid-State Sensors, Actuators and Microsystems).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Liquid pumping with surface tension-confined microfluidics

    Chao, S-H. & Meldrum, D., 2009, Proceedings of Conference, MicroTAS 2009 - The 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Chemical and Biological Microsystems Society, p. 61-63 3 p. (Proceedings of Conference, MicroTAS 2009 - The 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Microscale Oil-Covered Cell Array (MOCCA): A droplet array for high-content single-cell analysis and imaging

    Lin, L. I., Chao, S-H. & Meldrum, D., Dec 1 2009, Proceedings of the 7th International Conference on Nanochannels, Microchannels, and Minichannels 2009, ICNMM2009. PART A ed. p. 669-672 4 p. (Proceedings of the 7th International Conference on Nanochannels, Microchannels, and Minichannels 2009, ICNMM2009; no. PART A).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2008

    A flexible framework for automation of single cell and cell-to-cell interaction analyses

    Nandakumar, V., Holl, M. R. & Meldrum, D., Nov 3 2008, 4th IEEE Conference on Automation Science and Engineering, CASE 2008. p. 424-430 7 p. 4626576. (4th IEEE Conference on Automation Science and Engineering, CASE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Automated vision-based selection and placement of single cells in microwell array formats

    Anis, Y. H., Holl, M. R. & Meldrum, D., Nov 3 2008, 4th IEEE Conference on Automation Science and Engineering, CASE 2008. p. 315-320 6 p. 4626575. (4th IEEE Conference on Automation Science and Engineering, CASE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    16 Scopus citations
  • Integration of user interface, device control, data acquisition and analysis for automated multi-spectral imaging of single biological cells

    Sun, C. S., Etzkorn, J. R., Holl, M. R., Molter, T. W., Mcguire, S. K., McQuaide, S. C., Burgess, L. W., Lidstrom, M. E. & Meldrum, D., Nov 3 2008, 4th IEEE Conference on Automation Science and Engineering, CASE 2008. p. 1013-1018 6 p. 4626484. (4th IEEE Conference on Automation Science and Engineering, CASE 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • 2007

    Algorithm advancements for the measurement of single cell oxygen consumption rates

    Molter, T. W., McQuaide, S. C., Zhang, M., Holl, M. R., Burgess, L. W., Lidstrom, M. E. & Meldrum, D., Dec 1 2007, Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007. p. 386-391 6 p. 4341817. (Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Automated classification of macrophage membrane integrity using a fluorescent live/dead stain

    McVittie, P. J., Sun, C. S., Molter, T. W., McQuaide, S. C., Lidstrom, M. E., Holl, M. R. & Meldrum, D., Dec 1 2007, Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007. p. 554-559 6 p. 4341851. (Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Automation and yield of micron-scale self-assembly processes

    Saeedi, E., Kim, S. S., Etzkorn, J. R., Meldrum, D. & Parviz, B. A., Dec 1 2007, Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007. p. 375-380 6 p. 4341776. (Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Characterization of program controlled CO2 laser-cut PDMS channels for lab-on-a-chip applications

    Holle, A. W., Chao, S-H., Holl, M. R., Houkal, J. M. & Meldrum, D., Dec 1 2007, Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007. p. 621-627 7 p. 4341853. (Proceedings of the 3rd IEEE International Conference on Automation Science and Engineering, IEEE CASE 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Polymers with unprecedented NLO response

    Peyghambarian, N., Enami, Y., DeRose, C. T., Mathine, D., Loychik, C., Greenlee, C., Norwood, R. A., Kim, T. D., Luo, J., Tian, Y. & Jen, A. K. Y., Jan 1 2007, Frontiers in Optics, FiO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Ultrahigh electro-optic coefficient of 170pm/V and low Vπ of 1V at 1.55μm in hybrid polymer/sol-gel waveguide modulators

    Enami, Y., DeRose, C. T., Mathine, D., Loychik, C., Greenlee, C., Norwood, R. A., Stegeman, R., Kim, T. D., Luo, J., Tian, Y., Jen, A. K. Y. & Peyghambarian, N., 2007, Conference on Lasers and Electro-Optics, 2007, CLEO 2007. 4453170. (Conference on Lasers and Electro-Optics, 2007, CLEO 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Ultrahigh electro-optic coefficient of 170pm/V and low Vπ of 1V at 1.55μm in hybrid polymer/sol-gel waveguide modulators

    Enami, Y., DeRose, C. T., Mathine, D., Loychik, C., Greenlee, C., Norwood, R. A., Stegeman, R., Kim, T. D., Luo, J., Tian, Y., Jen, A. K. Y. & Peyghambarian, N., 2007, Conference on Lasers and Electro-Optics, CLEO 2007. Optical Society of America, (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 1996

    Polymer network stabilized SBE-LCD without stripe formation

    Wang, Q., Ma, Z., Tian, Y., Sun, R. & Huang, X., Dec 1 1996, Proceedings of SPIE - The International Society for Optical Engineering. Lean, E. G., Tian, Z. & Wu, B. G. (eds.). p. 213-219 7 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2892).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution