IAFSE-BHSE: Bioengineering, Harrington Department of – Scholarly Works

2019

A faster PISTOL for ¹ H MR-based quantitative tissue oximetry

Vidya Shankar, R. & Kodibagkar, V., Jan 1 2019, In : NMR in Biomedicine. e4076.

Research output: Contribution to journal › Article

Siloxanes

Oximetry

Oxygenation

Protons

Tissue

1 Citation (Scopus)

A mathematical model of dielectrophoretic data to connect measurements with cell properties

Hilton, S. H. & Hayes, M., Jan 1 2019, In : Analytical and bioanalytical chemistry.

Research output: Contribution to journal › Article

Electrophoresis

Theoretical Models

Mathematical models

Rhodococcus

Pasteurella multocida

A model for meme popularity growth in social networking systems based on biological principle and human interest dynamics

Wang, L. Z., Zhao, Z. D., Jiang, J., Guo, B. H., Wang, X., Huang, Z. G. & Lai, Y-C., Feb 1 2019, In : Chaos. 29, 2, 023136.

Research output: Contribution to journal › Article

Social Networking

Growth Model

Distinct

Social Behavior

Model

A single session of trip-specific training modifies trunk control following treadmill induced balance perturbations in stroke survivors

Nevisipour, M., Grabiner, M. D. & Honeycutt, C., May 1 2019, In : Gait and Posture. 70, p. 222-228 7 p.

Research output: Contribution to journal › Article

Stroke

Accidental Falls

Amputees

Biomechanical Phenomena

Incidence

A three-dimensional (3D) organotypic microfluidic model for glioma stem cells – Vascular interactions

Truong, D., Fiorelli, R., Barrientos, E. S., Melendez, E. L., Sanai, N., Mehta, S. & Nikkhah, M., Apr 1 2019, In : Biomaterials. 198, p. 63-77 15 p.

Research output: Contribution to journal › Article

Microfluidics

Stem cells

Glioma

Cell Communication

Blood Vessels

Benchmarking transcranial electrical stimulation finite element models: A comparison study

Indahlastari, A., Chauhan, M. & Sadleir, R., Jan 1 2019, In : Journal of Neural Engineering. 16, 2, 026019.

Research output: Contribution to journal › Article

Benchmarking

Current density

Pipelines

Boundary conditions

Head

Declines in motor transfer following upper extremity task-specific training in older adults

Walter, C. S., Hengge, C. R., Lindauer, B. E. & Schaefer, S., Feb 1 2019, In : Experimental Gerontology. 116, p. 14-19 6 p.

Research output: Contribution to journal › Article

Upper Extremity

Activities of Daily Living

Geriatrics

Linear regression

Regression analysis

Effects of vibrotactile feedback and grasp interface compliance on perception and control of a sensorized myoelectric hand

Pena, A. E., Rincon-Gonzalez, L., Abbas, J. & Jung, R., Jan 1 2019, In : PLoS One. 14, 1, e0210956.

Research output: Contribution to journal › Article

Hand Strength

compliance

Compliance

hands

Hand

Engineered orthogonal quorum sensing systems for synthetic gene regulation in escherichia coli

Tekel, S. J., Smith, C. L., Lopez, B., Mani, A., Connot, C., Livingstone, X. & Haynes, K., Jan 1 2019, In : Frontiers in Bioengineering and Biotechnology. 7, MAR, 80.

Research output: Contribution to journal › Article

Open Access

Synthetic Genes

Quorum Sensing

Crosstalk

Gene expression

Escherichia coli

Fast data acquisition techniques in magnetic resonance spectroscopic imaging

Vidya Shankar, R., Chang, J. C., Hu, H. H. & Kodibagkar, V., Jan 1 2019, (Accepted/In press) In : NMR in Biomedicine. e4046.

Research output: Contribution to journal › Article

Magnetic resonance

Data acquisition

Magnetic Resonance Imaging

Imaging techniques

Echo-Planar Imaging

Isolation and identification of Listeria monocytogenes utilizing DC insulator-based dielectrophoresis

Crowther, C. V., Hilton, S. H., Kemp, L. K. & Hayes, M., Jan 1 2019, In : Analytica Chimica Acta.

Research output: Contribution to journal › Article

Listeria

Listeria monocytogenes

Pathogens

Electrophoresis

Disease control

Metadherin Is a Prognostic Apoptosis Modulator in Mesothelioma Induced via NF-κB-Mediated Signaling

Zhang, L., Singh, A., Plaisier, C., Pruett, N., Ripley, R. T., Schrump, D. S. & Hoang, C. D., Jun 1 2019, In : Translational Oncology. 12, 6, p. 859-870 12 p.

Research output: Contribution to journal › Article

Open Access

Mesothelioma

Apoptosis

Heterografts

Phenotype

Neoplasms

1 Citation (Scopus)

Multifunctional CRISPR-Cas9 with engineered immunosilenced human T cell epitopes

Ferdosi, S. R., Ewaisha, R., Moghadam, F., Krishna, S., Park, J., Ebrahimkhani, M. R., Kiani, S. & Anderson, K., Dec 1 2019, In : Nature communications. 10, 1, 1842.

Research output: Contribution to journal › Article

Open Access

Clustered Regularly Interspaced Short Palindromic Repeats

T-Lymphocyte Epitopes

T-cells

Streptococcus pyogenes

T-Lymphocytes

Nanotrap-enabled quantification of KRAS-induced peptide hydroxylation in blood for cancer early detection

Deng, Z., Zhao, Z., Ning, B., Basilio, J., Mann, K., Fu, J., Gu, Y., Ye, Y., Wu, X., Fan, J., Chiao, P. & Hu, Y., Jan 1 2019, In : Nano Research.

Research output: Contribution to journal › Article

Hydroxylation

Bradykinin

Peptides

Blood

Prolyl Hydroxylases

Photoacoustic Flow System for the Detection of Ovarian Circulating Tumor Cells Utilizing Copper Sulfide Nanoparticles

Lusk, J. F., Miranda, C., Howell, M., Chrest, M., Eshima, J. & Smith, B., Mar 11 2019, In : ACS Biomaterials Science and Engineering. 5, 3, p. 1553-1560 8 p.

Research output: Contribution to journal › Article

Photoacoustic effect

Sulfides

Contrast Media

Tumors

Copper

1 Citation (Scopus)

Point-of-Care Tissue Analysis Using Miniature Mass Spectrometer

Zou, R., Cao, W., Chong, L., Hua, W., Xu, H., Mao, Y., Page, J., Shi, R., Xia, Y., Hu, Y., Zhang, W. & Ouyang, Z., Jan 2 2019, In : Analytical Chemistry. 91, 1, p. 1157-1163 7 p.

Research output: Contribution to journal › Article

Mass spectrometers

Tissue

Lipids

Ionization

Diagnostic products

Predicting Motor Sequence Learning in People With Parkinson Disease

Olivier, G. N., Paul, S. S., Lohse, K. R., Walter, C. S., Schaefer, S. & Dibble, L. E., Jan 1 2019, In : Journal of neurologic physical therapy : JNPT. 43, 1, p. 33-41 9 p.

Research output: Contribution to journal › Article

Parkinson Disease

Learning

Levodopa

Motor Skills

Rehabilitation

Project honeybee: Clinical applications for wearable biosensors

Hartwell, L., Ross, H. M. & LaBelle, J., Jun 1 2019, In : Biomedical Microdevices. 21, 2, 37.

Research output: Contribution to journal › Article

Biosensing Techniques

Biosensors

Nursing

Equipment and Supplies

Research

Sensorimotor uncertainty modulates corticospinal excitability during skilled object manipulation

Davare, M., Parikh, P. J. & Santello, M., Apr 1 2019, In : Journal of neurophysiology. 121, 4, p. 1162-1170 9 p.

Research output: Contribution to journal › Article

Open Access

Uncertainty

Aptitude

Hand Strength

Hand

1 Citation (Scopus)

The influence of electrically conductive and non-conductive nanocomposite scaffolds on the maturation and excitability of engineered cardiac tissues

Navaei, A., Rahmani Eliato, K., Ros, R., Migrino, R. Q., Willis, B. C. & Nikkhah, M., Feb 1 2019, In : Biomaterials Science. 7, 2, p. 585-595 11 p.

Research output: Contribution to journal › Article

Nanostructured materials

Scaffolds

Nanocomposites

Tissue

Stiffness matrix

Third generation impedimetric sensor employing direct electron transfer type glucose dehydrogenase

Ito, Y., Okuda-Shimazaki, J., Tsugawa, W., Loew, N., Shitanda, I., Lin, C. E., LaBelle, J. & Sode, K., Mar 15 2019, In : Biosensors and Bioelectronics. 129, p. 189-197 9 p.

Research output: Contribution to journal › Article

Glucose 1-Dehydrogenase

Glucose

Enzyme sensors

Electrons

Dielectric Spectroscopy

2018

A Disposable Tear Glucose Biosensor—Part 5: Improvements in Reagents and Tear Sampling Component

Lin, C. E., Ito, Y., Deng, A., Johns, J., Matloff, D., Cook, C. B., Sode, K. & LaBelle, J., Apr 1 2018, (Accepted/In press) In : Journal of diabetes science and technology.

Research output: Contribution to journal › Article

Glucose sensors

Glucose 1-Dehydrogenase

Tears

Glucose

Sampling

1 Citation (Scopus)

A low cost mobile phone dark-field microscope for nanoparticle-based quantitative studies

Sun, D. & Hu, Y., Jan 15 2018, In : Biosensors and Bioelectronics. 99, p. 513-518 6 p.

Research output: Contribution to journal › Article

Cell Phones

Mobile phones

Nanoparticles

Microscopes

Costs and Cost Analysis

Alternative methods for virtual heart transplant—Size matching for pediatric heart transplantation with and without donor medical images available

Plasencia, J. D., Kamarianakis, Y., Ryan, J. R., Karamlou, T., Park, S. S., Nigro, J. J., Frakes, D., Pophal, S. G., Lagerstrom, C. F., Velez, D. A. & Zangwill, S. D., Jan 1 2018, (Accepted/In press) In : Pediatric Transplantation.

Research output: Contribution to journal › Article

Heart Transplantation

Tissue Donors

Allografts

Pediatrics

Transplants

12 Citations (Scopus)

An enhanced CRISPR repressor for targeted mammalian gene regulation

Yeo, N. C., Chavez, A., Lance-Byrne, A., Chan, Y., Menn, D., Milanova, D., Kuo, C. C., Guo, X., Sharma, S., Tung, A., Cecchi, R. J., Tuttle, M., Pradhan, S., Lim, E. T., Davidsohn, N., Ebrahimkhani, M. R., Collins, J. J., Lewis, N. E., Kiani, S. & Church, G. M., Aug 1 2018, In : Nature Methods. 15, 8, p. 611-616 6 p.

Research output: Contribution to journal › Article

Clustered Regularly Interspaced Short Palindromic Repeats

Gene expression

Guide RNA

Genes

Endonucleases

2 Citations (Scopus)

An inhibitor screen identifies histone-modifying enzymes as mediators of polymer-mediated transgene expression from plasmid DNA

Christensen, M. D., Nitiyanandan, R., Meraji, S., Daer, R., Godeshala, S., Goklany, S., Haynes, K. & Rege, K., Sep 28 2018, In : Journal of Controlled Release. 286, p. 210-223 14 p.

Research output: Contribution to journal › Article

Transgenes

Histones

Polymers

Plasmids

DNA

1 Citation (Scopus)

An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells

Srinivasan, G., Morgan, D., Varun, D., Brookhouser, N. & Brafman, D., Jan 1 2018, (Accepted/In press) In : Acta Biomaterialia.

Research output: Contribution to journal › Article

Pluripotent Stem Cells

Central Nervous System Diseases

Bioreactors

Stem cells

Stem Cells

Antigen 85B peptidomic analysis allows species-specific mycobacterial identification

Zhang, W., Shu, Q., Zhao, Z., Fan, J., Lyon, C. J., Zelazny, A. M. & Hu, Y., Jan 8 2018, In : Clinical Proteomics. 15, 1, 1.

Research output: Contribution to journal › Article

Antigens

Peptides

Nontuberculous Mycobacteria

Mycobacterium

Lung

7 Citations (Scopus)

A roadmap for gene drives: using institutional analysis and development to frame research needs and governance in a systems context

Kuzma, J., Gould, F., Brown, Z., Collins, J., Delborne, J., Frow, E., Esvelt, K., Guston, D., Leitschuh, C., Oye, K. & Stauffer, S., Jan 24 2018, In : Journal of Responsible Innovation. 5, p. S13-S39

Research output: Contribution to journal › Article

Genes

Economics

Roadmap

Institutional development

Gene

2 Citations (Scopus)

Bilateral early activity in the hip flexors associated with falls in stroke survivors: Preliminary evidence from laboratory-induced falls

Celinskis, D., Grabiner, M. D. & Honeycutt, C., Jan 1 2018, In : Clinical Neurophysiology. 129, 1, p. 258-264 7 p.

Research output: Contribution to journal › Article

Hip

Stroke

Reflex

Stretch Reflex

Quadriceps Muscle

1 Citation (Scopus)

Blood–brainbarrier disruption dictates nanoparticle accumulation following experimental brain injury

Bharadwaj, V. N., Rowe, R. K., Harrison, J., Wu, C., Anderson, T. R., Lifshitz, J., Adelson, P. D., Kodibagkar, V. & Stabenfeldt, S., Oct 1 2018, In : Nanomedicine: Nanotechnology, Biology, and Medicine. 14, 7, p. 2155-2166 12 p.

Research output: Contribution to journal › Article

Nanoparticles

Brain Injuries

Brain

Percussion

Craniocerebral Trauma

1 Citation (Scopus)

Characterization of diverse homoserine lactone synthases in Escherichia coli

Daer, R., Barrett, C. M., Melendez, E. L., Wu, J., Tekel, S. J., Xu, J., Dennison, B., Muller, R. & Haynes, K., Aug 1 2018, In : PLoS One. 13, 8, e0202294.

Research output: Contribution to journal › Article

homoserine

lactones

Escherichia coli

quorum sensing

Quorum Sensing

4 Citations (Scopus)

Chemoresistance transmission via exosome-Mediated EphA2 transfer in pancreatic cancer

Fan, J., Wei, Q., Koay, E. J., Liu, Y., Ning, B., Bernard, P. W., Zhang, N., Han, H., Katz, M. H., Zhao, Z. & Hu, Y., Jan 1 2018, In : Theranostics. 8, 21, p. 5986-5994 9 p.

Research output: Contribution to journal › Article

Exosomes

Pancreatic Neoplasms

gemcitabine

Cell Line

Eph Family Receptors

3 Citations (Scopus)

Clinical evaluation of a blood assay to diagnose paucibacillary tuberculosis via bacterial antigens

Liu, C., Lyon, C. J., Bu, Y., Deng, Z., Walters, E., Li, Y., Zhang, L., Hesseling, A. C., Graviss, E. A. & Hu, Y., May 1 2018, In : Clinical Chemistry. 64, 5, p. 791-800 10 p.

Research output: Contribution to journal › Article

Bacterial Antigens

Mass spectrometry

Assays

Tuberculosis

Blood

Computing the ankle-brachial index with parallel computational fluid dynamics

Gounley, J., Draeger, E. W., Oppelstrup, T., Krauss, W. D., Gunnels, J. A., Chaudhury, R., Nair, P., Frakes, D., Leopold, J. A. & Randles, A., Jan 1 2018, (Accepted/In press) In : Journal of Biomechanics.

Research output: Contribution to journal › Article

Ankle Brachial Index

Hydrodynamics

Computational fluid dynamics

Geometry

Blood pressure

Concussion history is negatively associated with visual-motor force complexity: evidence for persistent effects on visual-motor integration

Raikes, A. C., Schaefer, S. & Studenka, B. E., Mar 1 2018, (Accepted/In press) In : Brain Injury. p. 1-8 8 p.

Research output: Contribution to journal › Article

Unconsciousness

Fingers

History

Costs and Cost Analysis

3 Citations (Scopus)

Coordinated plasticity of synapses and astrocytes underlies practice-driven functional vicariation in peri-infarct motor cortex

Kim, S. Y., Hsu, J. E., Husbands, L. C., Kleim, J. & Jones, T. A., Jan 3 2018, In : Journal of Neuroscience. 38, 1, p. 93-107 15 p.

Research output: Contribution to journal › Article

Motor Cortex

Astrocytes

Synapses

Anisomycin

Stroke

C-PLAD-SM: Extending component requirements with use cases and state machines

Gary, K. & Blake, M. B., 2018, In : Studies in Computational Intelligence. 722, p. 93-106 14 p.

Research output: Contribution to journal › Article

Specifications

Design, construction, and validation of histone-binding effectors in vitro and in cells

Tekel, S. J., Barrett, C. M., Vargas, D. A. & Haynes, K., Mar 17 2018, (Accepted/In press) In : Biochemistry.

Research output: Contribution to journal › Article

Post Translational Protein Processing

Histones

Chromatin

Proteins

Fusion reactions

1 Citation (Scopus)

Designer fungus FAD glucose dehydrogenase capable of direct electron transfer

Ito, K., Okuda-Shimazaki, J., Mori, K., Kojima, K., Tsugawa, W., Ikebukuro, K., Lin, C. E., LaBelle, J., Yoshida, H. & Sode, K., Jan 1 2018, (Accepted/In press) In : Biosensors and Bioelectronics.

Research output: Contribution to journal › Article

Glucose 1-Dehydrogenase

Glucose Dehydrogenases

Flavin-Adenine Dinucleotide

Fungi

Glucose

Development toward a novel integrated tear lactate sensor using Schirmer test strip and engineered lactate oxidase

Lin, C. E., Hiraka, K., Matloff, D., Johns, J., Deng, A., Sode, K. & LaBelle, J., Oct 1 2018, In : Sensors and Actuators, B: Chemical. 270, p. 525-529 5 p.

Research output: Contribution to journal › Article

lactate 2-monooxygenase

lactates

oxidase

Lactic Acid

strip

Direct Measurement of a Biomarker's Native Optimal Frequency with Physical Adsorption Based Immobilization

Honikel, M. M., Lin, C. E., Cardinell, B. A., LaBelle, J. & Penman, A. D., Apr 27 2018, In : ACS Sensors. 3, 4, p. 823-831 9 p.

Research output: Contribution to journal › Article

biomarkers

Biomarkers

immobilization

Adsorption

Lactoferrin

Dopamine Replacement Medication Does Not Influence Implicit Learning of a Stepping Task in People With Parkinson’s Disease

Paul, S. S., Schaefer, S., Olivier, G. N., Walter, C. S., Lohse, K. R. & Dibble, L. E., Dec 1 2018, In : Neurorehabilitation and Neural Repair. 32, 12, p. 1031-1042 12 p.

Research output: Contribution to journal › Article

Levodopa

Parkinson Disease

Dopamine

Learning

Motor Skills

2 Citations (Scopus)

Dynamical properties of postural control in obese community-dwelling older adults

Frames, C. W., Soangra, R., Lockhart, T., Lach, J., Ha, D. S., Roberto, K. A. & Lieberman, A., Jun 1 2018, In : Sensors (Switzerland). 18, 6, 1692.

Research output: Contribution to journal › Article

Independent Living

obesity

Body Mass Index

Accidental Falls

Obesity

3 Citations (Scopus)

Evidence for startle as a measurable behavioral indicator of motor learning

Kirkpatrick, N. J., Ravichandran, V. J., Perreault, E. J., Schaefer, S. & Honeycutt, C., May 1 2018, In : PLoS One. 13, 5, e0195689.

Research output: Contribution to journal › Article

elbows

reflexes

Fingers

hands

learning

Feature selection methods for robust decoding of finger movements in a non-human primate

Padmanaban, S., Baker, J. & Greger, B., Feb 6 2018, In : Frontiers in Neuroscience. 12, FEB, 22.

Research output: Contribution to journal › Article

Primates

Fingers

Action Potentials

Brain-Computer Interfaces

Motor Cortex

Fluorescent Guide RNAs Facilitate Development of Layered Pol II-Driven CRISPR Circuits

Menn, D. J., Pradhan, S., Kiani, S. & Wang, X., Aug 17 2018, In : ACS Synthetic Biology. 7, 8, p. 1929-1936 8 p.

Research output: Contribution to journal › Article

Clustered Regularly Interspaced Short Palindromic Repeats

Guide RNA

RNA

Networks (circuits)

Synthetic Genes

Generation and characterization of two human induced pluripotent stem cell (hiPSC) lines homozygous for the Apolipoprotein e4 (APOE4) risk variant—Alzheimer's disease (ASUi005-A) and healthy non-demented control (ASUi006-A)

Brookhouser, N., Zhang, P., Caselli, R., Kim, J. J. & Brafman, D., Oct 1 2018, In : Stem Cell Research. 32, p. 145-149 5 p.

Research output: Contribution to journal › Article

Apolipoprotein E4

Induced Pluripotent Stem Cells

Cell Line

Alzheimer Disease

Germ Layers

1 Citation (Scopus)

Improving fine control of grasping force during hand-object interactions for a soft synergy-inspired myoelectric prosthetic hand

Fu, Q. & Santello, M., Jan 10 2018, In : Frontiers in Neurorobotics. 11, JAN, 71.

Research output: Contribution to journal › Article

Prosthetics

Controllers

Force control

Sensory feedback

Gain control

1 Citation (Scopus)

Inertial sensor-based variables are indicators of frailty and adverse post-operative outcomes in cardiovascular disease patients

Soangra, R. & Lockhart, T., Jun 1 2018, In : Sensors (Switzerland). 18, 6, 1792.

Research output: Contribution to journal › Article

Cardiovascular Diseases

sensors

Sensors

gait

Smartphones