Health Information and Research, Center for (CHIR)

Research Output 1989 2019

2019

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature

Magge, A., Weissenbacher, D., Sarker, A., Scotch, M. & Gonzalez-Hernandez, G., Jan 1 2019, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 24, p. 100-111 12 p.

Research output: Contribution to journalArticle

Geographic Locations
Neural Networks (Computer)
Natural Language Processing
Phylogeography
Nucleic Acid Databases
Open Access
Sports

Effects of a lifestyle intervention on markers of cardiometabolic risk and oxidized lipoproteins among obese adolescents with prediabetes

Rentería-Mexía, A., Vega-Lopez, S., Olson, M. L., Swan, P., Lee, C., Williams, A. N. & Shaibi, G., Mar 1 2019, In : Public Health Nutrition. 22, 4, p. 706-713 8 p.

Research output: Contribution to journalArticle

Prediabetic State
Hispanic Americans
Lipoproteins
Life Style
Vegetables
Brachial Artery
Nitrites
Nitrates
Dilatation
Vegetables

High Prevalence of Undiagnosed Hyperglycemia in Low-Income Overweight and Obese Hispanic Women in Oregon

Lindberg, N. M., Vega-Lopez, S., LeBlanc, E. S., Leo, M. C., Stevens, V. J., Gille, S., Arias-Gastélum, M., Shuster, E., Meenan, R., Vaughn, K. A., Shaw, M. C. & Turner, A., Jan 1 2019, In : Journal of Racial and Ethnic Health Disparities.

Research output: Contribution to journalArticle

Prediabetic State
Hispanic Americans
Hyperglycemia
chronic illness
low income
1 Citation (Scopus)
Risk Reduction Behavior
African Americans
Randomized Controlled Trials
Exercise
Telemedicine
1 Citation (Scopus)

Six-Week High-Fat Diet Alters the Gut Microbiome and Promotes Cecal Inflammation, Endotoxin Production, and Simple Steatosis without Obesity in Male Rats

Crawford, M., Whisner, C., Al-Nakkash, L. & Sweazea, K., Feb 1 2019, In : Lipids. 54, 2-3, p. 119-131 13 p.

Research output: Contribution to journalArticle

High Fat Diet
Nutrition
Endotoxins
Rats
Obesity

The association of midlife cardiorespiratory fitness with later life carotid atherosclerosis: Cooper Center Longitudinal Study

Lee, J., Chen, B., Kohl, H. W., Barlow, C. E., Lee, C., Radford, N. B., DeFina, L. F. & Gabriel, K. P., Mar 1 2019, In : Atherosclerosis. 282, p. 137-142 6 p.

Research output: Contribution to journalArticle

Carotid Artery Diseases
Longitudinal Studies
Cardiorespiratory Fitness
Logistic Models
External Carotid Artery
3 Citations (Scopus)

The Health Risks of Obesity Have Been Exaggerated

Gaesser, G. & Blair, S. N., Jan 1 2019, In : Medicine and Science in Sports and Exercise. 51, 1, p. 218-221 4 p.

Research output: Contribution to journalReview article

Obesity
Health
Carotenoids
Dietary Supplements
Tissue
Nutrition
Xanthophylls
2018

Association of added sugar intake and caries-related experiences among individuals of Mexican origin

Vega-Lopez, S., Lindberg, N. M., Eckert, G. J., Nicholson, E. L. & Maupomé, G., Jan 1 2018, (Accepted/In press) In : Community Dentistry and Oral Epidemiology.

Research output: Contribution to journalArticle

Tooth
Beverages
Acculturation
Snacks
Eating
1 Citation (Scopus)

Association of Posture and Ambulation With Function 30 Days After Hospital Discharge in Older Adults with Heart Failure

Floegel, T. A., Dickinson, J., Der Ananian, C., McCarthy, M., Hooker, S. P. & Buman, M., Feb 1 2018, In : Journal of Cardiac Failure. 24, 2, p. 126-130 5 p.

Research output: Contribution to journalArticle

Posture
Walking
Heart Failure
Hand Strength
Confidence Intervals
Public Health Informatics
Information Storage and Retrieval
Zoonoses
Public health
Decision support systems

Avian influenza virus ecology and evolution through a climatic lens

Morin, C. W., Stoner-Duncan, B., Winker, K., Scotch, M., Hess, J. J., Meschke, J. S., Ebi, K. L. & Rabinowitz, P. M., Oct 1 2018, In : Environment International. 119, p. 241-249 9 p.

Research output: Contribution to journalReview article

avian influenza
virus
ecology
water temperature
persistence
26 Citations (Scopus)

A Youth Compendium of Physical Activities: Activity Codes and Metabolic Intensities

Butte, N. F., Watson, K. B., Ridley, K., Zakeri, I. F., McMurray, R. G., Pfeiffer, K. A., Crouter, S. E., Herrmann, S. D., Bassett, D. R., Long, A., Berhane, Z., Trost, S. G., Ainsworth, B., Berrigan, D. & Fulton, J. E., Feb 1 2018, In : Medicine and Science in Sports and Exercise. 50, 2, p. 246-256 11 p.

Research output: Contribution to journalArticle

Exercise
Costs and Cost Analysis
Basal Metabolism
Oxygen Consumption
Energy Metabolism

Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes

Adam, D. C., Scotch, M. & MacIntyre, C. R., Nov 1 2018, In : Molecular Biology and Evolution. 35, 11, p. 2607-2617 11 p.

Research output: Contribution to journalArticle

smallpox
Modifier Genes
Phylogeography
Smallpox
modifiers (genes)

Correction: Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform(PLoS ONE (2018) 13:4 (e0196556) DOI: 10.1371/journal.pone.0196556)

Morris, S. M., Subramanian, J., Gel, E., Runger, G., Thompson, E. J., Mallery, D. W. & Weiss, G. J., Jun 1 2018, In : PLoS One. 13, 6, e0200224.

Research output: Contribution to journalComment/debate

Names
Tumors
Gels
gels
neoplasms
3 Citations (Scopus)

CRAFTER: a Tree-ensemble Clustering Algorithm for Static Datasets with Mixed Attributes and High Dimensionality

Lin, S., Azarnoush, B. & Runger, G., Feb 16 2018, (Accepted/In press) In : IEEE Transactions on Knowledge and Data Engineering.

Research output: Contribution to journalArticle

Clustering algorithms
Data mining
Costs
Experiments
1 Citation (Scopus)

Cycling efficiency and energy cost of walking in young and older adults

Gaesser, G., Tucker, W. J., Sawyer, B. J., Bhammar, D. M. & Angadi, S., Feb 1 2018, In : Journal of Applied Physiology. 124, 2, p. 414-420 7 p.

Research output: Contribution to journalArticle

Walking
Young Adult
Costs and Cost Analysis
Age Groups
Reproducibility of Results

Decreased GlycA after lifestyle intervention among obese, prediabetic adolescent Latinos

Olson, M. L., Rentería-Mexía, A., Connelly, M. A., Vega-Lopez, S., Soltero, E. G., Konopken, Y. P., Williams, A. N., Castro, F., Keller, C. S., Yang, H. P., Todd, M. & Shaibi, G., Jan 1 2018, (Accepted/In press) In : Journal of Clinical Lipidology.

Research output: Contribution to journalArticle

Hispanic Americans
Life Style
Prediabetic State
Inflammation
Glucose

Deep neural networks and distant supervision for geographic location mention extraction

Magge, A., Weissenbacher, D., Sarker, A., Scotch, M. & Gonzalez-Hernandez, G., Jul 1 2018, In : Bioinformatics. 34, 13, p. i565-i573

Research output: Contribution to journalArticle

Geographic Locations
Nucleic Acid Databases
Viruses
Virus
Neural Networks

Effect of hydrogenated fat replacement with white sesame seed oil on physical, chemical and nutritional properties of cookies

Aslam, F., Iqbal, S., Nasir, M., Anjum, A. A., Swan, P. & Sweazea, K., Jan 30 2018, In : Italian Journal of Food Science. 30, 1, p. 13-25 13 p.

Research output: Contribution to journalArticle

Sesame Oil
sesame seed
sesame oil
cookies
hydrogenated oils
1 Citation (Scopus)

Energy cost expression for a youth compendium of physical activities: Rationale for using age groups

Pfeiffer, K. A., Watson, K. B., McMurray, R. G., Bassett, D. R., Butte, N. F., Crouter, S. E., Herrmann, S. D., Trost, S. G., Ainsworth, B., Fulton, J. E. & Berrigan, D., Feb 1 2018, In : Pediatric Exercise Science. 30, 1, p. 144-151 8 p.

Research output: Contribution to journalArticle

Age Groups
Exercise
Costs and Cost Analysis
Metabolic Equivalent
Energy Metabolism
1 Citation (Scopus)

GeoBoost: Accelerating research involving the geospatial metadata of virus GenBank records

Tahsin, T., Weissenbacher, D., O'Connor, K., Magge, A., Scotch, M. & Gonzalez-Hernandez, G., May 1 2018, In : Bioinformatics. 34, 9, p. 1606-1608 3 p.

Research output: Contribution to journalArticle

Nucleic Acid Databases
Metadata
Viruses
Virus
Software
1 Citation (Scopus)

Hair as a barrier to physical activity among African American women: A qualitative exploration

Joseph, R., Coe, K., Ainsworth, B., Hooker, S. P., Mathis, L. T. & Keller, C., Jan 17 2018, In : Frontiers in Public Health. 5, JAN, 367.

Research output: Contribution to journalArticle

African Americans
Hair
Exercise
Maintenance
Focus Groups

Health-Seeking Behaviors and Health Information Gathering in Older Mexican American Males

Ortiz-Dowling, E. M., Der Ananian, C., Larkey, L. & Hooker, S. P., Jan 1 2018, (Accepted/In press) In : Psychology of Men and Masculinity.

Research output: Contribution to journalArticle

Information Seeking Behavior
health information
Health
health
health promotion
4 Citations (Scopus)

High-intensity interval exercise attenuates but does not eliminate endothelial dysfunction after a fast food meal

Tucker, W. J., Sawyer, B. J., Jarrett, C. L., Bhammar, D. M., Ryder, J. R., Angadi, S. & Gaesser, G., Feb 1 2018, In : American Journal of Physiology - Heart and Circulatory Physiology. 314, 2, p. H188-H194

Research output: Contribution to journalArticle

Fast Foods
Meals
Exercise
Dilatation
Fasting
2 Citations (Scopus)

Identifying free-living physical activities using lab-based models with wearable accelerometers

Dutta, A., Ma, O., Toledo, M., Pregonero, A. F., Ainsworth, B., Buman, M. & Bliss, D., Nov 12 2018, In : Sensors (Switzerland). 18, 11, 3893.

Research output: Contribution to journalArticle

accelerometers
Accelerometers
Exercise
Hidden Markov models
Wrist

Interventions for Cardiovascular Disease Risk Reduction in Korean Americans: A Systematic Review

Shin, C., Keller, C., Sim, J., Im, E. O., Belyea, M. & Ainsworth, B., Jan 1 2018, (Accepted/In press) In : Clinical Nursing Research.

Research output: Contribution to journalArticle

Asian Americans
Risk Reduction Behavior
Cardiovascular Diseases
Health
Databases
vasodilation
Vasodilation
Vegetables
Nitrates
blood pressure
1 Citation (Scopus)

Nursing Gender Pay Differentials in the New Millennium

Wilson, B. L., Butler, M. J., Butler, R. J. & Johnson, W., Jan 1 2018, In : Journal of Nursing Scholarship. 50, 1, p. 102-108 7 p.

Research output: Contribution to journalArticle

Salaries and Fringe Benefits
Nursing
Nurses
Occupations
Patient Care
Acculturation
Leisure Activities
Odds Ratio
Confidence Intervals
Exercise
1 Citation (Scopus)

Perceptions of heart-healthy behaviors among African American adults: A mixed methods study

Der Ananian, C., Winham, D. M., Thompson, S. V. & Tisue, M. E., Nov 1 2018, In : International Journal of Environmental Research and Public Health. 15, 11, 2433.

Research output: Contribution to journalArticle

African Americans
Cardiovascular Diseases
Health Behavior
Focus Groups
Health
2 Citations (Scopus)

Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform

Morris, S., Subramanian, J., Gel, E., Runger, G., Thompson, E., Mallery, D. & Weiss, G., Apr 1 2018, In : PLoS One. 13, 4, e0196556.

Research output: Contribution to journalArticle

Tumors
neoplasms
Neoplasms
sampling
testing
1 Citation (Scopus)

Phylogeography of H5N1 avian influenza virus in Indonesia

Njoto, E. N., Scotch, M., Bui, C. M., Adam, D. C., Chughtai, A. A. & Macintyre, C. R., Jan 1 2018, (Accepted/In press) In : Transboundary and Emerging Diseases.

Research output: Contribution to journalArticle

Phylogeography
Influenza in Birds
Indonesia
phylogeography
Orthomyxoviridae

Physical activity as a mediator of the associations between perceived environments and body mass index in Chinese adolescents

Wang, J. J., Wang, M., Lau, P. W. C., Ainsworth, B., He, G. & Gao, Y., Nov 1 2018, In : Health and Place. 54, p. 37-42 6 p.

Research output: Contribution to journalArticle

physical activity
body mass
Body Mass Index
Exercise
adolescent
3 Citations (Scopus)

Plant-based diets: Considerations for environmental impact, protein quality, and exercise performance

Lynch, H., Johnston, C. & Wharton, C., Dec 1 2018, In : Nutrients. 10, 12, 1841.

Research output: Contribution to journalReview article

plant-based diet
environmental impact
exercise
athletic performance
Exercise

Postexercise Hemodynamic Responses in Lean and Obese Men

Zeigler, Z. S., Swan, P., Buman, M., Mookadam, F., Gaesser, G. & Angadi, S., Nov 1 2018, In : Medicine and Science in Sports and Exercise. 50, 11, p. 2292-2300 9 p.

Research output: Contribution to journalArticle

Hemodynamics
Blood Pressure
Post-Exercise Hypotension
Arm
Exercise
3 Citations (Scopus)

Query-by-committee improvement with diversity and density in batch active learning

Kee, S., del Castillo, E. & Runger, G., Jul 1 2018, In : Information Sciences. 454-455, p. 401-418 18 p.

Research output: Contribution to journalArticle

Active Learning
Batch
Query
Uncertainty
Distance Measure
2 Citations (Scopus)

Relevance of the glycemic index and glycemic load for body weight, diabetes, and cardiovascular disease

Vega-Lopez, S., Venn, B. J. & Slavin, J. L., Oct 1 2018, In : Nutrients. 10, 10, 1361.

Research output: Contribution to journalReview article

Glycemic Index
glycemic index
cardiovascular diseases
diabetes
Cardiovascular Diseases
3 Citations (Scopus)

Response

Hasson, R. E., Brown, D. R., Dorn, J., Barkley, L., Torgan, C., Whitt-Glover, M., Ainsworth, B. & Keith, N., Jun 1 2018, In : Medicine and Science in Sports and Exercise. 50, 6, p. 1342-1343 2 p.

Research output: Contribution to journalLetter

Taxonomy-based content analysis of sedentary behavior questionnaires: A systematic review

Rivière, F., Aubert, S., Omorou, A. Y., Ainsworth, B. & Vuillemin, A., Mar 1 2018, In : PLoS One. 13, 3, e0193812.

Research output: Contribution to journalReview article

systematic review
Taxonomies
questionnaires
taxonomy
Television

The effects of random taxa sampling schemes in Bayesian virus phylogeography

Magee, D. & Scotch, M., Oct 1 2018, In : Infection, Genetics and Evolution. 64, p. 225-230 6 p.

Research output: Contribution to journalArticle

Phylogeography
phylogeography
Sample Size
Linear Models
virus
Linear Models
Research Personnel
Phylogeography
Viruses
West Nile virus
5 Citations (Scopus)

The retention of dust in protoplanetary disks: Evidence from agglomeratic olivine chondrules from the outer Solar System

Schrader, D., Nagashima, K., Waitukaitis, S. R., Davidson, J., McCoy, T. J., Connolly, H. C. & Lauretta, D. S., Feb 15 2018, In : Geochimica et Cosmochimica Acta. 223, p. 405-421 17 p.

Research output: Contribution to journalArticle

chondrule
Solar system
solar system
Dust
olivine
4 Citations (Scopus)

U.S. nationwide reconnaissance of ten infrequently monitored antibiotics in municipal biosolids

Magee, H., Maurer, M. M., Cobos, A., Pycke, B. F. G., Venkatesan, A. K., Magee, D., Scotch, M. & Halden, R., Dec 1 2018, In : Science of the Total Environment. 643, p. 460-467 8 p.

Research output: Contribution to journalArticle

Biosolids
biosolid
Sewage sludge
Antibiotics
antibiotics

Use of complementary approaches in pregnant women with a history of miscarriage

Huberty, J., Matthews, J., Leiferman, J. A. & Lee, C., Feb 1 2018, In : Complementary Therapies in Medicine. 36, p. 1-5 5 p.

Research output: Contribution to journalArticle

Spontaneous Abortion
Pregnant Women
Anxiety
Depression
Yoga

Using point-of-choice prompts to reduce sedentary behavior in sit-stand workstation users

Larouche, M. L., Mullane, S. L., Toledo, M. J. L., Pereira, M. A., Huberty, J., Ainsworth, B. & Buman, M., Nov 21 2018, In : Frontiers in Public Health. 6, NOV, 323.

Research output: Contribution to journalArticle

Cross-Over Studies
Health
Surveys and Questionnaires
Social Theory

Utility of the Youth Compendium of Physical Activities

Ainsworth, B., Watson, K. B., Ridley, K., Pfeiffer, K. A., Herrmann, S. D., Crouter, S. E., McMurray, R. G., Butte, N. F., Bassett, D. R., Trost, S. G., Berrigan, D. & Fulton, J. E., Jul 3 2018, In : Research Quarterly for Exercise and Sport. 89, 3, p. 273-281 9 p.

Research output: Contribution to journalArticle

Exercise
Private Sector
Costs and Cost Analysis
Public Health
Metabolic Equivalent