Research output per year
Research output per year
- 1 - 50 out of 148 results
Search results
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2023
Mitigation and use of biofilms in space for the benefit of human space exploration
Vélez Justiniano, Y. A., Goeres, D. M., Sandvik, E. L., Kjellerup, B. V., Sysoeva, T. A., Harris, J. S., Warnat, S., McGlennen, M., Foreman, C. M., Yang, J., Li, W., Cassilly, C. D., Lott, K. & HerrNeckar, L. E., Dec 2023, In: Biofilm. 5, 100102.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Toward sustainable space exploration: a roadmap for harnessing the power of microorganisms
Santomartino, R., Averesch, N. J. H., Bhuiyan, M., Cockell, C. S., Colangelo, J., Gumulya, Y., Lehner, B., Lopez-Ayala, I., McMahon, S., Mohanty, A., Santa Maria, S. R., Urbaniak, C., Volger, R., Yang, J. & Zea, L., Dec 2023, In: Nature communications. 14, 1, 1391.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
2022
Role of RpoS in Regulating Stationary Phase Salmonella Typhimurium Pathogenesis-Related Stress Responses under Physiological Low Fluid Shear Force Conditions
Meléndez, K. F., Crenshaw, K., Barrila, J., Yang, J., Gangaraju, S., Davis, R. R., Forsyth, R. J., Ott, C. M., Kader, R., Curtiss, R., Roland, K. & Nickerson, C. A., Aug 2022, In: mSphere. 7, 4Research output: Contribution to journal › Article › peer-review
Open Access -
Spaceflight Analogue Culture Enhances the Host-Pathogen Interaction Between Salmonella and a 3-D Biomimetic Intestinal Co-Culture Model
Barrila, J., Yang, J., Franco Meléndez, K. P., Yang, S., Buss, K., Davis, T. J., Aronow, B. J., Bean, H. D., Davis, R. R., Forsyth, R. J., Ott, C. M., Gangaraju, S., Kang, B. Y., Hanratty, B., Nydam, S. D., Nauman, E. A., Kong, W., Steel, J. & Nickerson, C. A., May 31 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 705647.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
2021
Evaluating the effect of spaceflight on the host–pathogen interaction between human intestinal epithelial cells and Salmonella Typhimurium
Barrila, J., Sarker, S. F., Hansmeier, N., Yang, S., Buss, K., Briones, N., Park, J., Davis, R. R., Forsyth, R. J., Ott, C. M., Sato, K., Kosnik, C., Yang, A., Shimoda, C., Rayl, N., Ly, D., Landenberger, A., Wilson, S. D., Yamazaki, N., Steel, J., & 5 others, Dec 2021, In: npj Microgravity. 7, 1, 9.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Longitudinal characterization of multispecies microbial populations recovered from spaceflight potable water
Yang, J., Barrila, J., Mark Ott, C., King, O., Bruce, R., McLean, R. J. C. & Nickerson, C. A., Dec 2021, In: npj Biofilms and Microbiomes. 7, 1, 70.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2020
CapsNet-SSP: Multilane capsule network for predicting human saliva-secretory proteins
Du, W., Sun, Y., Li, G., Cao, H., Pang, R. & Li, Y., Jun 9 2020, In: BMC bioinformatics. 21, 1, 237.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
DEEPSMP: A deep learning model for predicting the ectodomain shedding events of membrane proteins
Cao, Z., Du, W., Li, G. & Cao, H., Jun 1 2020, In: Journal of Bioinformatics and Computational Biology. 18, 3, 2050017.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
DeepUEP: Prediction of Urine Excretory Proteins Using Deep Learning
Du, W., Pang, R., Li, G., Cao, H., Li, Y. & Liang, Y., 2020, In: IEEE Access. 8, p. 100251-100261 11 p., 9102239.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Novel nanovirus and associated alphasatellites identified in milk vetch plants with chlorotic dwarf disease in Iran
Hassan-Sheikhi, P., Heydarnejad, J., Massumi, H., Kraberger, S. & Varsani, A., Jan 15 2020, In: Virus research. 276, 1 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Suppression of water-bloom cyanobacterium Microcystis aeruginosa by algaecide hydrogen peroxide maximized through programmed cell death
Zhou, T., Cao, H., Zheng, J., Teng, F., Wang, X., Lou, K., Zhang, X. & Tao, Y., Jul 5 2020, In: Journal of Hazardous Materials. 393, 122394.Research output: Contribution to journal › Article › peer-review
37 Scopus citations -
The trait repertoire enabling cyanobacteria to bloom assessed through comparative genomic complexity and metatranscriptomics
Cao, H., Shimura, Y., Steffen, M. M., Yang, Z., Lu, J., Joel, A., Jenkins, L., Kawachi, M., Yin, Y. & Garcia-Pichel, F., 2020, In: mBio. 11, 3, p. 1-14 14 p., e01155-20.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
2019
Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)
Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A., & 2 others, Mar 1 2019, In: Archives of virology. 164, 3, p. 943-946 4 p.Research output: Contribution to journal › Article › peer-review
Open Access80 Scopus citations -
Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake, Ohio, USA)
Zhu, B., Cao, H., Li, G., Du, W., Xu, G., Domingo, J. S., Gu, H., Xu, N., Duan, S. & Lu, J., Feb 2019, In: Harmful Algae. 82, p. 9-18 10 p.Research output: Contribution to journal › Article › peer-review
13 Scopus citations -
Deamination reaction mechanisms of protonated amines under hydrothermal conditions
Robinson, K. J., Gould, I., Fecteau, K. M., Hartnett, H., Williams, L. & Shock, E., Jan 1 2019, In: Geochimica et Cosmochimica Acta. 244, p. 113-128 16 p.Research output: Contribution to journal › Article › peer-review
17 Scopus citations -
Dinoflagellate nucleus contains an extensive endomembrane network, the nuclear net
Gavelis, G. S., Herranz, M., Wakeman, K. C., Ripken, C., Mitarai, S., Gile, G., Keeling, P. J. & Leander, B. S., Dec 1 2019, In: Scientific reports. 9, 1, 839.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera)
Kraberger, S., Cook, C. N., Schmidlin, K., Fontenele, R. S., Bautista, J., Smith, B. & Varsani, A., Jul 2019, In: Infection, Genetics and Evolution. 71, p. 179-188 10 p.Research output: Contribution to journal › Article › peer-review
24 Scopus citations -
Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities
Xue, C., Hao, Y., Pu, X., Penton, C., Wang, Q., Zhao, M., Zhang, B., Ran, W., Huang, Q., Shen, Q. & Tiedje, J. M., Jan 1 2019, In: Biology and Fertility of Soils. 55, 1, p. 79-88 10 p.Research output: Contribution to journal › Article › peer-review
29 Scopus citations -
Energy oversupply to tissues: A single mechanism possibly underlying multiple cancer risk factors
Wu, D. J., Aktipis, C. A. & Pepper, J. W., Jan 21 2019, In: Evolution, Medicine and Public Health. 2019, 1, p. 9-16 8 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Evidence of age-related improvement in the foraging efficiency of Adélie penguins
Lescroël, A., Ballard, G., Massaro, M., Dugger, K., Jennings, S., Pollard, A., Porzig, E., Schmidt, A., Varsani, A., Grémillet, D. & Ainley, D., Dec 1 2019, In: Scientific reports. 9, 1, 3375.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Geochemical-compositional-functional changes in arctic soil microbiomes post land submergence revealed by metagenomics
Wang, N., Guo, Y., Li, G., Xia, Y., Ma, M., Zang, J., Ma, Y., Yin, X., Han, W., Lv, J. & Cao, H., 2019, In: Microbes and Environments. 34, 2, p. 180-190 11 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Knowledge and attitudes towards breastfeeding practices: A cross-sectional survey of postnatal mothers in China
Hamze, L., Mao, J. & Reifsnider, E., Jul 2019, In: Midwifery. 74, p. 68-75 8 p.Research output: Contribution to journal › Article › peer-review
32 Scopus citations -
Long-term warming in Alaska enlarges the diazotrophic community in deep soils
Feng, J., Penton, C., He, Z., Van Nostrand, J. D., Yuan, M. M., Wu, L., Wang, C., Qin, Y., Shi, Z. J., Guo, X., Schuur, E. A. G., Luo, Y., Bracho, R., Konstantinidis, K. T., Cole, J. R., Tiedje, J. M., Yang, Y. & Zhou, J., Jan 1 2019, In: mBio. 10, 1, e02521-18.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand
Richet, C., Kraberger, S., Filloux, D., Bernardo, P., Harkins, G. W., Martin, D. P., Roumagnac, P. & Varsani, A., Jan 22 2019, In: Archives of virology. 164, 1, p. 237-242 6 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Patterns and Correlates of Self-Reported Physical Activity in a Cohort of Racially Diverse Pregnant Adolescents
Steinl, G. K., Whisner, C., Pressman, E. K., Cooper, E. M., Groth, S. W. & O'Brien, K. O., Feb 2019, In: Journal of Pediatric and Adolescent Gynecology. 32, 1, p. 51-56 6 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes
Dorrell, R. G., Azuma, T., Nomura, M., de Kerdrel, G. A., Paoli, L., Yang, S., Bowler, C., Ishii, K. I., Miyashita, H., Gile, G. & Kamikawa, R., Apr 2 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 14, p. 6914-6923 10 p.Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations -
Production of carboxylic acids from aldehydes under hydrothermal conditions: A kinetics study of benzaldehyde
Fecteau, K. M., Gould, I., Glein, C. R., Williams, L., Hartnett, H. & Shock, E., Feb 21 2019, In: ACS Earth and Space Chemistry. 3, 2, p. 170-191 22 p.Research output: Contribution to journal › Article › peer-review
13 Scopus citations -
Reply Re: "amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community"
Lim, E., Rodriguez, C. & Holtz, L. R., Feb 12 2019, In: Microbiome. 7, 1, 21.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Reshaping the rhizosphere microbiome by bio-organic amendment to enhance crop yield in a maize-cabbage rotation system
Qiao, C., Penton, C., Xiong, W., Liu, C., Wang, R., Liu, Z., Xu, X., Li, R. & Shen, Q., Oct 2019, In: Applied Soil Ecology. 142, p. 136-146 11 p.Research output: Contribution to journal › Article › peer-review
46 Scopus citations -
Six-Week High-Fat Diet Alters the Gut Microbiome and Promotes Cecal Inflammation, Endotoxin Production, and Simple Steatosis without Obesity in Male Rats
Crawford, M., Whisner, C., Al-Nakkash, L. & Sweazea, K., Feb 1 2019, In: Lipids. 54, 2-3, p. 119-131 13 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
Suppression of banana Panama disease induced by soil microbiome reconstruction through an integrated agricultural strategy
Shen, Z., Xue, C., Penton, C., Thomashow, L. S., Zhang, N., Wang, B., Ruan, Y., Li, R. & Shen, Q., Jan 2019, In: Soil Biology and Biochemistry. 128, p. 164-174 11 p.Research output: Contribution to journal › Article › peer-review
60 Scopus citations -
The Combined Impact of Sleep and Diet on Adiposity in Infants, Toddlers, and Young Children: A Systematic Review
Vander Wyst, K. B., Whisner, C., Reifsnider, E. & Petrov, M., Apr 1 2019, In: Journal of developmental and behavioral pediatrics : JDBP. 40, 3, p. 224-236 13 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
The Effect of Organic Carbon on Soil Bacterial Diversity in an Antarctic Lake Region
Han, W., Wang, N., Ma, Y., Lv, J., Wang, S., Zhang, B., Jiang, Z. & Cao, H., Dec 1 2019, In: Journal of Ocean University of China. 18, 6, p. 1402-1410 9 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Timing the evolutionary advent of cyanobacteria and the later great oxidation event using gene phylogenies of a sunscreen
Garcia-Pichel, F., Lombard, J., Soule, T., Dunaj, S., Wu, S. H. & Wojciechowski, M., May 1 2019, In: mBio. 10, 3, e00561-19.Research output: Contribution to journal › Article › peer-review
Open Access45 Scopus citations -
2018
Acculturation, Cultural Values, and Breastfeeding in Overweight or Obese, Low-Income, Hispanic Women at 1 Month Postpartum
Shin, C., Reifsnider, E., McClain, D., Jeong, M., McCormick, D. P. & Moramarco, M., May 1 2018, In: Journal of Human Lactation. 34, 2, p. 358-364 7 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales
Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B. & Dreher, T. W., Jul 2018, In: Harmful Algae. 77, p. 93-107 15 p.Research output: Contribution to journal › Article › peer-review
21 Scopus citations -
Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites
Briddon, R. W., Martin, D. P., Roumagnac, P., Navas-Castillo, J., Fiallo-Olivé, E., Moriones, E., Lett, J. M., Zerbini, F. M. & Varsani, A., Sep 1 2018, In: Archives of virology. 163, 9, p. 2587-2600 14 p.Research output: Contribution to journal › Article › peer-review
Open Access99 Scopus citations -
Alterations in soil fungal community composition and network assemblage structure by different long-term fertilization regimes are correlated to the soil ionome
Xue, C., Penton, C., Zhu, C., Chen, H., Duan, Y., Peng, C., Guo, S., Ling, N. & Shen, Q., Jan 1 2018, In: Biology and Fertility of Soils. 54, 1, p. 95-106 12 p.Research output: Contribution to journal › Article › peer-review
33 Scopus citations -
Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
Lim, E., Rodriguez, C. & Holtz, L. R., May 11 2018, In: Microbiome. 6, 1, 87.Research output: Contribution to journal › Article › peer-review
Open Access91 Scopus citations -
A new niche for anoxygenic phototrophs as endoliths
Roush, D., Couradeau, E., Guida, B., Neuer, S. & Garcia-Pichel, F., Feb 1 2018, In: Applied and environmental microbiology. 84, 4, e02055-17.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Associations of Diabetes-Related Distress and Depressive Symptoms With Glycemic Control in Korean Americans With Type 2 Diabetes
Jeong, M. & Reifsnider, E., Dec 1 2018, In: Diabetes Educator. 44, 6, p. 531-540 10 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Biochar application influences microbial assemblage complexity and composition due to soil and bioenergy crop type interactions
Yu, J., Deem, L. M., Crow, S. E., Deenik, J. L. & Penton, C., Feb 2018, In: Soil Biology and Biochemistry. 117, p. 97-107 11 p.Research output: Contribution to journal › Article › peer-review
58 Scopus citations -
Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra
Liang, J., Xia, J., Shi, Z., Jiang, L., Ma, S., Lu, X., Mauritz, M., Natali, S. M., Pegoraro, E., Penton, C., Plaza, C., Salmon, V. G., Celis, G., Cole, J. R., Konstantinidis, K. T., Tiedje, J. M., Zhou, J., Schuur, E. A. G. & Luo, Y., Oct 2018, In: Global change biology. 24, 10, p. 4946-4959 14 p.Research output: Contribution to journal › Article › peer-review
20 Scopus citations -
Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018)
King, A. M. Q., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Siddell, S. G., Simmonds, P., Varsani, A., & 2 others, Sep 1 2018, In: Archives of virology. 163, 9, p. 2601-2631 31 p.Research output: Contribution to journal › Article › peer-review
Open Access212 Scopus citations -
Clade and strain specific contributions of Synechococcus and Prochlorococcus to carbon export in the Sargasso Sea
De Martini, F., Neuer, S., Hamill, D., Robidart, J. & Lomas, M. W., Mar 2018, In: Limnology and Oceanography. 63, p. S448-S457Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Cross-cultural invariances in the architecture of shame
Sznycer, D., Xygalatas, D., Agey, E., Alami, S., An, X. F., Ananyeva, K. I., Atkinson, Q. D., Broitman, B. R., Conte, T. J., Flores, C., Fukushima, S., Hitokoto, H., Kharitonov, A. N., Onyishi, C. N., Onyishi, I. E., Romero, P. P., Schrock, J. M., Snodgrass, J. J., Sugiyama, L. S., Takemura, K., & 6 others, Sep 25 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. 9702-9707 6 p.Research output: Contribution to journal › Article › peer-review
Open Access58 Scopus citations -
Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: A cross-sectional study
Whisner, C., Maldonado, J., Dente, B., Krajmalnik-Brown, R. & Bruening, M., Dec 12 2018, In: BMC Microbiology. 18, 1, 210.Research output: Contribution to journal › Article › peer-review
Open Access34 Scopus citations -
Direct and indirect effects of penguin feces on microbiomes in Antarctic ornithogenic soils
Guo, Y., Wang, N., Li, G., Rosas, G., Zang, J., Ma, Y., Liu, J., Han, W. & Cao, H., Apr 3 2018, In: Frontiers in Microbiology. 9, APR, 552.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Discovery of the first maize-infecting mastrevirus in the Americas using a vector-enabled metagenomics approach
Fontenele, R. S., Alves-Freitas, D. M. T., Silva, P. I. T., Foresti, J., Silva, P. R., Godinho, M. T., Varsani, A. & Ribeiro, S. G., Jan 1 2018, In: Archives of virology. 163, 1, p. 263-267 5 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Diverse papillomaviruses identified in weddell seals
Smeele, Z. E., Burns, J. M., Van Doorsaler, K., Fontenele, R. S., Waits, K., Stainton, D., Shero, M. R., Beltran, R. S., Kirkham, A. L., Berngartt, R., Kraberger, S. & Varsani, A., Apr 2018, In: Journal of General Virology. 99, 4, p. 549-557 9 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations