Evolution and Medicine, Center for

Research Output 2002 2019

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2019

Data Management and Data Sharing in Science and Technology Studies

Maienschein, J., Parker, J. N., Laubichler, M. & Hackett, E. J., Jan 1 2019, In : Science Technology and Human Values. 44, 1, p. 143-160 18 p.

Research output: Contribution to journalArticle

technology studies
science studies
Information management
management
science
1 Citation (Scopus)

Different evolution acceptance instruments lead to different research findings

Barnes, M. E., Dunlop, H. M., Holt, E. A., Zheng, Y. & Brownell, S., Jan 1 2019, In : Evolution: Education and Outreach. 12, 1, 4.

Research output: Contribution to journalArticle

Open Access
acceptance
student
research results
education
students

Energy oversupply to tissues: A single mechanism possibly underlying multiple cancer risk factors

Wu, D. J., Aktipis, C. A. & Pepper, J. W., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

Open Access
risk factor
cancer
risk factors
somatic cells
neoplasms

GenBio-MAPS: A Programmatic Assessment to Measure Student Understanding of Vision and Change Core Concepts across General Biology Programs

Couch, B. A., Wright, C. D., Freeman, S., Knight, J. K., Semsar, K., Smith, M. K., Summers, M. M., Zheng, Y., Crowe, A. J. & Brownell, S., Mar 1 2019, In : CBE Life Sciences Education. 18, 1, p. ar1

Research output: Contribution to journalArticle

biology
Students
science
student
performance

Inferring demography and selection in organisms characterized by skewed offspring distributions

Sackman, A. M., Harris, R. B. & Jensen, J., Mar 1 2019, In : Genetics. 211, 3, p. 1019-1028 10 p.

Research output: Contribution to journalArticle

Demography
Metagenomics
Aquatic Organisms
Influenza A virus
Population Genetics

Kin terms and fitness interdependence

Cronk, L., Steklis, D., Steklis, N., van den Akker, O. & Aktipis, C. A., Jan 1 2019, (Accepted/In press) In : Evolution and Human Behavior.

Research output: Contribution to journalArticle

Anthropology
Marriage
Terminology
genetic relationships
fitness
1 Citation (Scopus)

Linking a mutation to survival in wild mice

Barrett, R. D. H., Laurent, S., Mallarino, R., Pfeifer, S., Xu, C. C. Y., Foll, M., Wakamatsu, K., Duke-Cohan, J. S., Jensen, J. & Hoekstra, H. E., Feb 1 2019, In : Science. 363, 6426, p. 499-504 6 p.

Research output: Contribution to journalArticle

Genetic Selection
Color
Phenotype
Mutation
Pigmentation

Mapping the potential use of endectocide-treated cattle to reduce malaria transmission

Imbahale, S. S., Montaña Lopez, J., Brew, J., Paaijmans, K., Rist, C. & Chaccour, C., Dec 1 2019, In : Scientific reports. 9, 1, 5826.

Research output: Contribution to journalArticle

Open Access
Malaria
Western Africa
Eastern Africa
Anopheles
Africa South of the Sahara
1 Citation (Scopus)

Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody

Prachanronarong, K. L., Canale, A. S., Liu, P., Somasundaran, M., Hou, S., Poh, Y. P., Han, T., Zhu, Q., Renzette, N., Zeldovich, K. B., Kowalik, T. F., Kurt-Yilmaz, N., Jensen, J., Bolon, D. N. A., Marasco, W. A., Finberg, R. W., Schiffer, C. A. & Wang, J. P., Jan 1 2019, In : Journal of Virology. 93, 2, e01639-18.

Research output: Contribution to journalArticle

sialidase
Influenza A virus
Hemagglutinins
hemagglutinins
neutralization

Phys-MAPS: a programmatic physiology assessment for introductory and advanced undergraduates

Semsar, K., Brownell, S., Couch, B. A., Crowe, A. J., Smith, M. K., Summers, M. M., Wright, C. D. & Knight, J. K., Mar 1 2019, In : Advances in physiology education. 43, 1, p. 15-27 13 p.

Research output: Contribution to journalArticle

Students
Analysis of Variance
Curriculum
Homeostasis
Demography
2018

A course-embedded comparison of instructor-generated videos of either an instructor alone or an instructor and a student

Cooper, K. M., Ding, L., Stephens, M. D., Chi, M. T. H. & Brownell, S., Jun 1 2018, In : CBE life sciences education. 17, 2, ar31.

Research output: Contribution to journalArticle

Open Access
instructor
video
Students
Physiology
physiology
12 Citations (Scopus)

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Jones, M. R., Scott Mills, L., Alves, P. C., Callahan, C. M., Alves, J. M., Lafferty, D. J. R., Jiggins, F. M., Jensen, J., Melo-Ferreira, J. & Good, J. M., Jun 22 2018, In : Science. 360, 6395, p. 1355-1358 4 p.

Research output: Contribution to journalArticle

Hares
Molting
Snow
Gene Flow
Seeds
3 Citations (Scopus)

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

Dexter, E., Bollens, S. M., Cordell, J., Soh, H. Y., Rollwagen-Bollens, G., Pfeifer, S., Goudet, J. & Vuilleumier, S., Jun 1 2018, In : Biological Invasions. 20, 6, p. 1577-1595 19 p.

Research output: Contribution to journalArticle

Copepoda
coasts
coast
ballast water
estuarine ecosystem

Bioinformatics core competencies for undergraduate life sciences education

Wilson Sayres, M., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Jungck, J. R. & 14 othersNewman, J. D., Pearson, W., Ryder, E. F., Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martínez, A., Welch, L. R., Wright, R., Barone, L., Ebenbach, D., McWilliams, M., Olney, K. C. & Pauley, M. A., Jun 1 2018, In : PLoS One. 13, 6, e0196878.

Research output: Contribution to journalArticle

science education
Problem-Based Learning
Biological Science Disciplines
Computational Biology
college students
2 Citations (Scopus)

Cancer initiation and progression within the cancer microenvironment

Leong, S. P., Aktipis, C. A. & Maley, C., Jul 11 2018, (Accepted/In press) In : Clinical and Experimental Metastasis. p. 1-7 7 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Neoplasms
Growth
Biological Phenomena
Melanoma
4 Citations (Scopus)

Coalescent processes with skewed offspring distributions and nonequilibrium demography

Matuszewski, S., Hildebrandt, M. E., Achaz, G. & Jensen, J., Jan 1 2018, In : Genetics. 208, 1, p. 323-338 16 p.

Research output: Contribution to journalArticle

Demography
Genealogy and Heraldry
Population Growth
Ecology
Sequence Analysis
3 Citations (Scopus)

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Tollis, M., Hutchins, E. D., Stapley, J., Rupp, S. M., Eckalbar, W. L., Maayan, I., Lasku, E., Infante, C. R., Dennis, S. R., Robertson, J. A., May, C. M., Crusoe, M. R., Bermingham, E., Denardo, D., Hsieh, S. T. T., Kulathinal, R. J., McMillan, W. O., Menke, D. B., Pratt, S., Rawls, J. & 5 othersSanjur, O., Wilson-Rawls, N., Wilson Sayres, M., Fisher, R. E. & Kusumi, K., Feb 1 2018, In : Genome Biology and Evolution. 10, 2, p. 489-506 18 p.

Research output: Contribution to journalArticle

Lizards
Genomics
lizard
Anolis
lizards
4 Citations (Scopus)

Core principles of evolutionary medicine: A Delphi study

Grunspan, D. Z., Nesse, R., Barnes, M. E. & Brownell, S., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Delphi Technique
medicine
Medicine
evolutionary biology
teachers
3 Citations (Scopus)

Cross-cultural invariances in the architecture of shame

Sznycer, D., Xygalatas, D., Agey, E., Alami, S., An, X. F., Ananyeva, K. I., Atkinson, Q. D., Broitman, B. R., Conte, T. J., Flores, C., Fukushima, S., Hitokoto, H., Kharitonov, A. N., Onyishi, C. N., Onyishi, I. E., Romero, P. P., Schrock, J. M., Snodgrass, J. J., Sugiyama, L. S., Takemura, K. & 6 othersTownsend, C., Zhuang, J. Y., Aktipis, C. A., Cronk, L., Cosmides, L. & Tooby, J., Sep 25 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. 9702-9707 6 p.

Research output: Contribution to journalArticle

Shame
Cultural Evolution
Theft
Action Potentials
Language

EcoEvo-MAPS: An ecology and evolution assessment for introductory through advanced undergraduates

Summers, M. M., Couch, B. A., Knight, J. K., Brownell, S., Crowe, A. J., Semsar, K., Wright, C. D. & Smith, M. K., Jun 1 2018, In : CBE life sciences education. 17, 2, ar18.

Research output: Contribution to journalArticle

Open Access
Ecology
ecology
Students
student
bachelor
1 Citation (Scopus)
disaster recovery
disaster
economic recovery
hurricanes
disasters
1 Citation (Scopus)

From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013

Zou, Y. & Laubichler, M., Jul 1 2018, In : PLoS One. 13, 7, e0200929.

Research output: Contribution to journalArticle

Systems Biology
Biological Sciences
Research
Research Personnel
researchers

Genome sequence of a single-stranded DNA virus identified in Gila monster feces

Somayaji, V., Denardo, D., Wilson Sayres, M., Blake, M., Waits, K., Fontenele, R. S., Kraberger, S. & Varsania, A., Aug 23 2018, In : Microbiology Resource Announcements. 7, 7, e00925-18.

Research output: Contribution to journalArticle

DNA Viruses
Lizards
Single-Stranded DNA
Feces
Reindeer
4 Citations (Scopus)

Human papilloma virus specific immunogenicity and dysfunction of CD8+ T cells in head and neck cancer

Krishna, S., Ulrich, P., Wilson, E., Parikh, F., Narang, P., Yang, S., Read, A. K., Kim-Schulze, S., Park, J., Posner, M., Wilson Sayres, M., Sikora, A. & Anderson, K., Nov 1 2018, In : Cancer Research. 78, 21, p. 6159-6170 12 p.

Research output: Contribution to journalArticle

Papillomaviridae
Head and Neck Neoplasms
T-Lymphocytes
Human papillomavirus 16
Antigens
1 Citation (Scopus)

Modeling the subclonal evolution of cancer cell populations

Chowell, D., Napier, J., Gupta, R., Anderson, K., Maley, C. & Wilson Sayres, M., Feb 1 2018, In : Cancer Research. 78, 3, p. 830-839 10 p.

Research output: Contribution to journalArticle

Population
Neoplasms
Clone Cells
Genetic Drift
Mutation

Nutrition transition in 2 lowland Bolivian subsistence populations

Kraft, T. S., Stieglitz, J., Trumble, B., Martin, M., Kaplan, H. & Gurven, M., Dec 1 2018, In : The American journal of clinical nutrition. 108, 6, p. 1183-1195 13 p.

Research output: Contribution to journalArticle

Diet
Carbohydrates
Bolivia
Oils
Cardiovascular Diseases

On the unfounded enthusiasm for soft selective sweeps II: Examining recent evidence from humans, flies, and viruses

Harris, R. B., Sackman, A. & Jensen, J., Dec 1 2018, In : PLoS Genetics. 14, 12, e1007859.

Research output: Contribution to journalArticle

Diptera
virus
Viruses
viruses
Demography

Polyamidoamine nanoparticles for the oral administration of antimalarial drugs

Coma-Cros, E. M., Biosca, A., Marques, J., Carol, L., Urbán, P., Berenguer, D., Riera, M. C., Delves, M., Sinden, R. E., Valle-Delgado, J. J., Spanos, L., Siden-Kiamos, I., Pérez, P., Paaijmans, K., Rottmann, M., Manfredi, A., Ferruti, P., Ranucci, E. & Fernàndez-Busquets, X., Dec 1 2018, In : Pharmaceutics. 10, 4, 225.

Research output: Contribution to journalArticle

Plasmodium
Antimalarials
Nanoparticles
Oral Administration
Culicidae
2 Citations (Scopus)

Synonymous Mutations at the Beginning of the Influenza A Virus Hemagglutinin Gene Impact Experimental Fitness

Canale, A. S., Venev, S. V., Whitfield, T. W., Caffrey, D. R., Marasco, W. A., Schiffer, C. A., Kowalik, T. F., Jensen, J., Finberg, R. W., Zeldovich, K. B., Wang, J. P. & Bolon, D. N. A., Apr 13 2018, In : Journal of Molecular Biology. 430, 8, p. 1098-1115 18 p.

Research output: Contribution to journalArticle

Influenza A virus
Hemagglutinins
Genes
Viral RNA
Swine
3 Citations (Scopus)

The association of genomic lesions and PD-1/PD-L1 expression in resected triple-negative breast cancers

Barrett, M. T., Lenkiewicz, E., Malasi, S., Basu, A., Yearley, J. H., Annamalai, L., McCullough, A. E., Kosiorek, H. E., Narang, P., Wilson Sayres, M., Chen, M., Anderson, K. & Pockaj, B. A., Jul 11 2018, In : Breast Cancer Research. 20, 1, 71.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Neoplasms
Staining and Labeling
Microsatellite Instability
Aneuploidy
Linear Models
Research Personnel
Phylogeography
Viruses
West Nile virus

The efficacy of whole human genome capture on ancient dental calculus and dentin

Ziesemer, K. A., Ramos-Madrigal, J., Mann, A. E., Brandt, B. W., Sankaranarayanan, K., Ozga, A. T., Hoogland, M., Hofman, C. A., Salazar-García, D. C., Frohlich, B., Milner, G. R., Stone, A., Aldenderfer, M., Lewis, C. M., Hofman, C. L., Warinner, C. & Schroeder, H., Jan 1 2018, (Accepted/In press) In : American Journal of Physical Anthropology.

Research output: Contribution to journalArticle

Dental Calculus
Human Genome
Dentin
Calculi
DNA
7 Citations (Scopus)

The evolutionary history of Nebraska deer mice: Local adaptation in the face of strong gene flow

Pfeifer, S., Laurent, S., Sousa, V. C., Linnen, C. R., Foll, M., Excoffier, L., Hoekstra, H. E. & Jensen, J., Apr 1 2018, In : Molecular Biology and Evolution. 35, 4, p. 792-806 15 p.

Research output: Contribution to journalArticle

Peromyscus
Gene Flow
local adaptation
Islands
deer
1 Citation (Scopus)

The fitness landscape of the codon space across environments

Fragata, I., Matuszewski, S., Schmitz, M. A., Bataillon, T., Jensen, J. & Bank, C., Jan 1 2018, (Accepted/In press) In : Heredity.

Research output: Contribution to journalArticle

Codon
Mutation
Amino Acids
Markov Chains
Saccharomyces cerevisiae
3 Citations (Scopus)

The glocal curriculum: A model for transnational collaboration in higher education for sustainable development

Caniglia, G., John, B., Bellina, L., Lang, D. J., Wiek, A., Cohmer, S. & Laubichler, M., Jan 10 2018, In : Journal of Cleaner Production. 171, p. 368-376 9 p.

Research output: Contribution to journalArticle

higher education
curriculum
Curricula
Sustainable development
sustainable development

The impact of within-host ecology on the fitness of a drug-resistant parasite

Huijben, S., Chan, B. H. K., Nelson, W. A. & Read, A. F., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 127-137 11 p.

Research output: Contribution to journalArticle

Open Access
Ecology
parasite
Parasites
drug
fitness
1 Citation (Scopus)

The importance of the Neutral Theory in 1968 and 50 years on: a response to Kern and Hahn 2018

Jensen, J., Payseur, B. A., Stephan, W., Aquadro, C. F., Lynch, M., Charlesworth, D. & Charlesworth, B., Jan 1 2018, (Accepted/In press) In : Evolution.

Research output: Contribution to journalArticle

Molecular Evolution
Genetic Selection
natural selection
Genome
genome
1 Citation (Scopus)

The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells

Olney, K. C., Nyer, D. B., Vargas, D. A., Wilson Sayres, M. & Haynes, K., Sep 25 2018, In : BMC Systems Biology. 12, 1, 83.

Research output: Contribution to journalArticle

Interferons
Transcription factors
Transcription Factor
Breast Cancer
Regulator
2 Citations (Scopus)
Biological Sciences
Biological Science Disciplines
life science
need
2017
2 Citations (Scopus)
Problem-Based Learning
Students
learning
experience
student
3 Citations (Scopus)

A call to develop course-based undergraduate research experiences (CUREs) for Nonmajors courses

Ballen, C. J., Blum, J. E., Brownell, S., Hebert, S., Hewlett, J., Klein, J. R., McDonald, E. A., Monti, D. L., Nold, S. C., Slemmons, K. E., Soneral, P. A. G. & Cotner, S., Jun 1 2017, In : CBE Life Sciences Education. 16, 2

Research output: Contribution to journalArticle

Research
experience
Practice Guidelines
best practice
Learning
2 Citations (Scopus)

Broadening participation in biology education research: Engaging community college students and faculty

Schinske, J. N., Balke, V. L., Bangera, M. G., Bonney, K. M., Brownell, S., Carter, R. S., Curran-Everett, D., Dolan, E. L., Elliott, S. L., Fletcher, L., Gonzalez, B., Gorga, J. J., Hewlett, J. A., Kiser, S. L., McFarland, J. L., Misra, A., Nenortas, A., Ngeve, S. M., Pape-Lindstrom, P. A., Seidel, S. B. & 3 othersTuthill, M. C., Yin, Y. & Corwin, L. A., Jun 1 2017, In : CBE Life Sciences Education. 16, 2

Research output: Contribution to journalArticle

biology
Education
Students
participation
Research
6 Citations (Scopus)

Carbon dating cancer: Defining the chronology of metastatic progression in colorectal cancer

Lote, H., Spiteri, I., Ermini, L., Vatsiou, A., Roy, A., McDonald, A., Maka, N., Balsitis, M., Bose, N., Simbolo, M., Mafficini, A., Lampis, A., Hahne, J. C., Trevisani, F., Eltahir, Z., Mentrasti, G., Findlay, C., Kalkman, E. A. J., Punta, M., Werner, B. & 10 othersLise, S., Aktipis, C. A., Maley, C., Greaves, M., Braconi, C., White, J., Fassan, M., Scarpa, A., Sottoriva, A. & Valeri, N., Jun 1 2017, In : Annals of Oncology. 28, 6, p. 1243-1249 7 p., mdx074.

Research output: Contribution to journalArticle

Radiometric Dating
Chronology
Colorectal Neoplasms
Neoplasms
Neoplasm Metastasis
9 Citations (Scopus)

Characterizing human cytomegalovirus reinfection in congenitally infected infants: An evolutionary perspective

Pokalyuk, C., Renzette, N., Irwin, K. K., Pfeifer, S., Gibson, L., Britt, W. J., Yamamoto, A. Y., Mussi-Pinhata, M. M., Kowalik, T. F. & Jensen, J., 2017, (Accepted/In press) In : Molecular Ecology.

Research output: Contribution to journalArticle

Human herpesvirus 5
Cytomegalovirus
pregnancy
Population
demographic history
10 Citations (Scopus)

CRISPR-Cas9–mediated saturated mutagenesis screen predicts clinical drug resistance with improved accuracy

Ma, L., Boucher, J. I., Paulsen, J., Matuszewski, S., Eide, C. A., Ou, J., Eickelberg, G., Press, R. D., Zhu, L. J., Druker, B. J., Branford, S., Wolfe, S. A., Jensen, J., Schiffer, C. A., Green, M. R. & Bolon, D. N., Oct 31 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 44, p. 11751-11756 6 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Drug Resistance
Mutagenesis
Mutation
Oncogenes
2 Citations (Scopus)

Determining the population affinity of an unprovenienced human skull for repatriation

Watkins, J. K., Blatt, S. H., Bradbury, C. A., Alanko, G. A., Kohn, M. J., Lytle, M. L., Taylor, J., Lacroix, D., Nieves-Colón, M. A., Stone, A. & Butt, D. P., Apr 1 2017, In : Journal of Archaeological Science: Reports. 12, p. 384-394 11 p.

Research output: Contribution to journalArticle

remigration
adulthood
energy
present
resources
3 Citations (Scopus)

Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions

Wu, S. H., Schwartz, R. S., Winter, D. J., Conrad, D. F. & Cartwright, R., Aug 1 2017, In : Bioinformatics. 33, 15, p. 2322-2329 8 p.

Research output: Contribution to journalArticle

Dirichlet Distribution
Multinomial Distribution
Error Model
Sequencing
Genome
4 Citations (Scopus)

Evolution of dosage compensation in Anolis carolinensis, a reptile with XX/XY chromosomal sex determination

Rupp, S. M., Webster, T. H., Olney, K. C., Hutchins, E. D., Kusumi, K. & Wilson Sayres, M., Jan 1 2017, In : Genome Biology and Evolution. 9, 1, p. 231-240 10 p.

Research output: Contribution to journalArticle

Anolis carolinensis
Sex Chromosomes
sex determination
Reptiles
reptile
6 Citations (Scopus)

Experiences of judeo-christian students in undergraduate biology

Barnes, M. E., Truong, J. M. & Brownell, S., Mar 1 2017, In : CBE Life Sciences Education. 16, 1, ar15.

Research output: Contribution to journalArticle

biology
Mathematics
Students
mathematics
engineering
3 Citations (Scopus)

Experimental evolution reveals an effective avenue to release catabolite repression via mutations in XylR

Sievert, C., Nieves, L. M., Panyon, L. A., Loeffler, T., Morris, C., Cartwright, R., Wang, X. & Demain, A. L., Jul 11 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 28, p. 7349-7354 6 p.

Research output: Contribution to journalArticle

Catabolite Repression
Xylose
Mutation
Escherichia coli
Biomass