CLAS-NS: Evolution and Medicine, Center for

Research Output 1998 2019

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2019

Computational history of knowledge: Challenges and opportunities

Laubichler, M., Maienschein, J. & Renn, J., Sep 1 2019, In : ISIS. 110, 3, p. 502-512 11 p.

Research output: Contribution to journalArticle

twenty first century
fighting
history
methodology
History of Knowledge

Computed tomography shows high fracture prevalence among physically active forager-horticulturalists with high fertility

HORUS Study Team, Aug 16 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
Bone Density
Tomography
Fertility
Bone
Minerals
1 Citation (Scopus)

Data Management and Data Sharing in Science and Technology Studies

Maienschein, J., Parker, J. N., Laubichler, M. & Hackett, E. J., Jan 1 2019, In : Science Technology and Human Values. 44, 1, p. 143-160 18 p.

Research output: Contribution to journalArticle

technology studies
science studies
Information management
management
science
1 Citation (Scopus)

Energy oversupply to tissues: A single mechanism possibly underlying multiple cancer risk factors

Wu, D. J., Aktipis, C. A. & Pepper, J. W., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

Open Access
risk factor
cancer
risk factors
somatic cells
neoplasms

Focus: Computational history and philosophy of science

Gibson, A., Laubichler, M. & Maienschein, J., Sep 1 2019, In : ISIS. 110, 3, p. 497-501 5 p.

Research output: Contribution to journalArticle

history
technological development
data management
historical record
science

Inferring demography and selection in organisms characterized by skewed offspring distributions

Sackman, A. M., Harris, R. B. & Jensen, J., Mar 1 2019, In : Genetics. 211, 3, p. 1019-1028 10 p.

Research output: Contribution to journalArticle

Demography
Metagenomics
Aquatic Organisms
Influenza A virus
Population Genetics
1 Citation (Scopus)

Kin terms and fitness interdependence

Cronk, L., Steklis, D., Steklis, N., van den Akker, O. & Aktipis, C. A., Jan 1 2019, (Accepted/In press) In : Evolution and Human Behavior.

Research output: Contribution to journalArticle

Anthropology
Marriage
Terminology
genetic relationships
fitness
10 Citations (Scopus)

Linking a mutation to survival in wild mice

Barrett, R. D. H., Laurent, S., Mallarino, R., Pfeifer, S., Xu, C. C. Y., Foll, M., Wakamatsu, K., Duke-Cohan, J. S., Jensen, J. & Hoekstra, H. E., Feb 1 2019, In : Science. 363, 6426, p. 499-504 6 p.

Research output: Contribution to journalArticle

Genetic Selection
Color
Phenotype
Mutation
Pigmentation

Mapping the potential use of endectocide-treated cattle to reduce malaria transmission

Imbahale, S. S., Montaña Lopez, J., Brew, J., Paaijmans, K., Rist, C. & Chaccour, C., Dec 1 2019, In : Scientific reports. 9, 1, 5826.

Research output: Contribution to journalArticle

Open Access
Malaria
Western Africa
Eastern Africa
Anopheles
Africa South of the Sahara

Molecular analysis of muscle progenitor cells on extracellular matrix coatings and hydrogels

Palade, J., Pal, A., Rawls, J., Stabenfeldt, S. & Wilson-Rawls, N., Jan 1 2019, (Accepted/In press) In : Acta Biomaterialia.

Research output: Contribution to journalArticle

Hydrogels
Muscle Cells
Extracellular Matrix
Muscle
Stem Cells
3 Citations (Scopus)

Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody

Prachanronarong, K. L., Canale, A. S., Liu, P., Somasundaran, M., Hou, S., Poh, Y. P., Han, T., Zhu, Q., Renzette, N., Zeldovich, K. B., Kowalik, T. F., Kurt-Yilmaz, N., Jensen, J., Bolon, D. N. A., Marasco, W. A., Finberg, R. W., Schiffer, C. A. & Wang, J. P., Jan 1 2019, In : Journal of Virology. 93, 2, e01639-18.

Research output: Contribution to journalArticle

sialidase
Influenza A virus
Hemagglutinins
hemagglutinins
neutralization

The state of evolutionary medicine in undergraduate education

Grunspan, D. Z., Moeller, K. T., Nesse, R. & Brownell, S., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 82-92 11 p.

Research output: Contribution to journalArticle

Open Access
State Medicine
college students
medicine
education
Medicine
2018
19 Citations (Scopus)

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Jones, M. R., Scott Mills, L., Alves, P. C., Callahan, C. M., Alves, J. M., Lafferty, D. J. R., Jiggins, F. M., Jensen, J., Melo-Ferreira, J. & Good, J. M., Jun 22 2018, In : Science. 360, 6395, p. 1355-1358 4 p.

Research output: Contribution to journalArticle

Hares
Molting
Snow
Gene Flow
Seeds
3 Citations (Scopus)

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

Dexter, E., Bollens, S. M., Cordell, J., Soh, H. Y., Rollwagen-Bollens, G., Pfeifer, S., Goudet, J. & Vuilleumier, S., Jun 1 2018, In : Biological Invasions. 20, 6, p. 1577-1595 19 p.

Research output: Contribution to journalArticle

Copepoda
coasts
coast
ballast water
estuarine ecosystem
3 Citations (Scopus)
Apolipoproteins E
Alzheimer Disease
Alleles
Genotype
Age of Onset
3 Citations (Scopus)

Bioinformatics core competencies for undergraduate life sciences education

Wilson Sayres, M., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Jungck, J. R. & 14 others, Newman, J. D., Pearson, W., Ryder, E. F., Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martínez, A., Welch, L. R., Wright, R., Barone, L., Ebenbach, D., McWilliams, M., Olney, K. C. & Pauley, M. A., Jun 1 2018, In : PLoS One. 13, 6, e0196878.

Research output: Contribution to journalArticle

science education
Problem-Based Learning
Biological Science Disciplines
Computational Biology
college students
4 Citations (Scopus)

Cancer initiation and progression within the cancer microenvironment

Leong, S. P., Aktipis, C. A. & Maley, C., Jul 11 2018, (Accepted/In press) In : Clinical and Experimental Metastasis. p. 1-7 7 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Neoplasms
Growth
Biological Phenomena
Melanoma
4 Citations (Scopus)

Coalescent processes with skewed offspring distributions and nonequilibrium demography

Matuszewski, S., Hildebrandt, M. E., Achaz, G. & Jensen, J., Jan 1 2018, In : Genetics. 208, 1, p. 323-338 16 p.

Research output: Contribution to journalArticle

Demography
Genealogy and Heraldry
Population Growth
Ecology
Sequence Analysis
4 Citations (Scopus)

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Tollis, M., Hutchins, E. D., Stapley, J., Rupp, S. M., Eckalbar, W. L., Maayan, I., Lasku, E., Infante, C. R., Dennis, S. R., Robertson, J. A., May, C. M., Crusoe, M. R., Bermingham, E., Denardo, D., Hsieh, S. T. T., Kulathinal, R. J., McMillan, W. O., Menke, D. B., Pratt, S., Rawls, J. & 5 others, Sanjur, O., Wilson-Rawls, N., Wilson Sayres, M., Fisher, R. E. & Kusumi, K., Feb 1 2018, In : Genome Biology and Evolution. 10, 2, p. 489-506 18 p.

Research output: Contribution to journalArticle

Lizards
Genomics
lizard
Anolis
lizards
6 Citations (Scopus)

Consumption explains intraspecific variation in nutrient recycling stoichiometry in a desert fish

Moody, E. K., Carson, E. W., Corman, J. R., Espinosa-Pérez, H., Ramos, J., Sabo, J. & Elser, J., Jul 1 2018, In : Ecology. 99, 7, p. 1552-1561 10 p.

Research output: Contribution to journalArticle

intraspecific variation
stoichiometry
recycling
deserts
desert
3 Citations (Scopus)

Coping with iron limitation: a metabolomic study of Synechocystis sp. PCC 6803

Rivas-Ubach, A., Poret-Peterson, A. T., Peñuelas, J., Sardans, J., Pérez-Trujillo, M., Legido-Quigley, C., Oravec, M., Urban, O. & Elser, J., Feb 1 2018, In : Acta Physiologiae Plantarum. 40, 2, 28.

Research output: Contribution to journalArticle

Metabolomics
metabolomics
Cyanobacteria
Synechocystis
Iron
5 Citations (Scopus)

Core principles of evolutionary medicine: A Delphi study

Grunspan, D. Z., Nesse, R., Barnes, M. E. & Brownell, S., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Delphi Technique
medicine
Medicine
evolutionary biology
teachers
1 Citation (Scopus)

CORL expression and function in insulin producing neurons reversibly influences adult longevity in Drosophila

Tran, N. L., Goldsmith, S. L., Dimitriadou, A., Takaesu, N. T., Consoulas, C. & Newfeld, S., Sep 1 2018, In : G3: Genes, Genomes, Genetics. 8, 9, p. 2979-2990 12 p.

Research output: Contribution to journalArticle

Drosophila
Insulin
Neurons
Peptides
Brain
2 Citations (Scopus)

CORL expression in the Drosophila central nervous system is regulated by stage specific interactions of intertwined activators and repressors

Tran, N. L., Takaesu, N. T., Cornell, E. F. & Newfeld, S., Jul 1 2018, In : G3: Genes, Genomes, Genetics. 8, 7, p. 2527-2536 10 p.

Research output: Contribution to journalArticle

Mushroom Bodies
Drosophila
Central Nervous System
Insulin
Activin Receptors
8 Citations (Scopus)

Cross-cultural invariances in the architecture of shame

Sznycer, D., Xygalatas, D., Agey, E., Alami, S., An, X. F., Ananyeva, K. I., Atkinson, Q. D., Broitman, B. R., Conte, T. J., Flores, C., Fukushima, S., Hitokoto, H., Kharitonov, A. N., Onyishi, C. N., Onyishi, I. E., Romero, P. P., Schrock, J. M., Snodgrass, J. J., Sugiyama, L. S., Takemura, K. & 6 others, Townsend, C., Zhuang, J. Y., Aktipis, C. A., Cronk, L., Cosmides, L. & Tooby, J., Sep 25 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. 9702-9707 6 p.

Research output: Contribution to journalArticle

Shame
Cultural Evolution
Theft
Action Potentials
Language
7 Citations (Scopus)

Eco-evolutionary dynamics of ecological stoichiometry in plankton communities

Branco, P., Egas, M., Elser, J. & Huisman, J., Jul 1 2018, In : American Naturalist. 192, 1, p. E1-E20

Research output: Contribution to journalArticle

stoichiometry
plankton
phytoplankton
zooplankton
phosphorus
1 Citation (Scopus)

Effects of rainfall manipulations on carbon exchange of cyanobacteria and moss-dominated biological soil crusts

Zhang, C., Niu, D., Song, M., Elser, J., Okie, J. & Fu, H., Sep 1 2018, In : Soil Biology and Biochemistry. 124, p. 24-31 8 p.

Research output: Contribution to journalArticle

Bryophyta
soil crusts
soil crust
Cyanobacteria
moss
2 Citations (Scopus)
disaster recovery
disaster
economic recovery
hurricanes
disasters
1 Citation (Scopus)

From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013

Zou, Y. & Laubichler, M., Jul 1 2018, In : PLoS One. 13, 7, e0200929.

Research output: Contribution to journalArticle

Systems Biology
Biological Sciences
Research
Research Personnel
researchers
1 Citation (Scopus)

Genome sequence of a single-stranded DNA virus identified in Gila monster feces

Somayaji, V., Denardo, D., Wilson Sayres, M., Blake, M., Waits, K., Fontenele, R. S., Kraberger, S. & Varsania, A., Aug 23 2018, In : Microbiology Resource Announcements. 7, 7, e00925-18.

Research output: Contribution to journalArticle

DNA Viruses
Lizards
Single-Stranded DNA
Feces
Reindeer
6 Citations (Scopus)

Human papilloma virus specific immunogenicity and dysfunction of CD8+ T cells in head and neck cancer

Krishna, S., Ulrich, P., Wilson, E., Parikh, F., Narang, P., Yang, S., Read, A. K., Kim-Schulze, S., Park, J., Posner, M., Wilson Sayres, M., Sikora, A. & Anderson, K., Nov 1 2018, In : Cancer Research. 78, 21, p. 6159-6170 12 p.

Research output: Contribution to journalArticle

Papillomaviridae
Head and Neck Neoplasms
T-Lymphocytes
Human papillomavirus 16
Antigens
3 Citations (Scopus)

Identification of satellite cells from anole lizard skeletal muscle and demonstration of expanded musculoskeletal potential

Palade, J., Djordjevic, D., Hutchins, E. D., George, R. M., Cornelius, J. A., Rawls, J., Ho, J. W. K., Kusumi, K. & Wilson-Rawls, N., Jan 15 2018, In : Developmental Biology. 433, 2, p. 344-356 13 p.

Research output: Contribution to journalArticle

Lizards
Skeletal Muscle
Transcriptome
Genes
Cartilage

Integrating fluorescence computed tomography with optical sheet illumination for imaging of live single cells

Cao, B., Shetty, R., Smith, D., Kelbauskas, L. & Meldrum, D., Sep 3 2018, In : Optics Express. 26, 18, p. 24020-24030 11 p.

Research output: Contribution to journalArticle

tomography
illumination
fluorescence
cells
spatial resolution
3 Citations (Scopus)

Modeling the subclonal evolution of cancer cell populations

Chowell, D., Napier, J., Gupta, R., Anderson, K., Maley, C. & Wilson Sayres, M., Feb 1 2018, In : Cancer Research. 78, 3, p. 830-839 10 p.

Research output: Contribution to journalArticle

Population
Neoplasms
Clone Cells
Genetic Drift
Mutation
11 Citations (Scopus)

Multifunctional PHPMA-Derived Polymer for Ratiometric pH Sensing, Fluorescence Imaging, and Magnetic Resonance Imaging

Su, F., Agarwal, S., Pan, T., Qiao, Y., Zhang, L., Shi, Z., Kong, X., Day, K., Chen, M., Meldrum, D., Kodibagkar, V. & Tian, Y., Jan 17 2018, In : ACS Applied Materials and Interfaces. 10, 2, p. 1556-1565 10 p.

Research output: Contribution to journalArticle

Polymers
Fluorescence
Imaging techniques
Magnetic resonance
Relaxation time
3 Citations (Scopus)

Nutrition transition in 2 lowland Bolivian subsistence populations

Kraft, T. S., Stieglitz, J., Trumble, B., Martin, M., Kaplan, H. & Gurven, M., Dec 1 2018, In : The American journal of clinical nutrition. 108, 6, p. 1183-1195 13 p.

Research output: Contribution to journalArticle

Diet
Carbohydrates
Bolivia
Oils
Cardiovascular Diseases
2 Citations (Scopus)

On the unfounded enthusiasm for soft selective sweeps II: Examining recent evidence from humans, flies, and viruses

Harris, R. B., Sackman, A. & Jensen, J., Dec 1 2018, In : PLoS Genetics. 14, 12, e1007859.

Research output: Contribution to journalArticle

Diptera
virus
Viruses
viruses
Demography
1 Citation (Scopus)

Parallel fabrication of macroporous scaffolds

Dobos, A., Grandhi, T. S. P., Godeshala, S., Meldrum, D. & Rege, K., Jan 1 2018, (Accepted/In press) In : Biotechnology and Bioengineering.

Research output: Contribution to journalArticle

Scaffolds
Hydrogel
Fabrication
Equipment and Supplies
Aminoglycosides

Responses of leaf C:N:P stoichiometry to water supply in the desert shrub Zygophyllum xanthoxylum

Niu, D., Zhang, C., Ma, P., Fu, H. & Elser, J., Jan 1 2018, (Accepted/In press) In : Plant Biology.

Research output: Contribution to journalArticle

stoichiometry
water supply
deserts
shrub
shrubs
2 Citations (Scopus)

Simultaneous multiparameter cellular energy metabolism profiling of small populations of cells

Kelbauskas, L., Ashili, S. P., Lee, K. B., Zhu, H., Tian, Y. & Meldrum, D., Dec 1 2018, In : Scientific Reports. 8, 1, 4359.

Research output: Contribution to journalArticle

Energy Metabolism
Population
Technology
Mitochondrial Membrane Potential
Oxygen Consumption
2 Citations (Scopus)

Synonymous Mutations at the Beginning of the Influenza A Virus Hemagglutinin Gene Impact Experimental Fitness

Canale, A. S., Venev, S. V., Whitfield, T. W., Caffrey, D. R., Marasco, W. A., Schiffer, C. A., Kowalik, T. F., Jensen, J., Finberg, R. W., Zeldovich, K. B., Wang, J. P. & Bolon, D. N. A., Apr 13 2018, In : Journal of Molecular Biology. 430, 8, p. 1098-1115 18 p.

Research output: Contribution to journalArticle

Influenza A virus
Hemagglutinins
Genes
Viral RNA
Swine
8 Citations (Scopus)

The association of genomic lesions and PD-1/PD-L1 expression in resected triple-negative breast cancers

Barrett, M. T., Lenkiewicz, E., Malasi, S., Basu, A., Yearley, J. H., Annamalai, L., McCullough, A. E., Kosiorek, H. E., Narang, P., Wilson Sayres, M., Chen, M., Anderson, K. & Pockaj, B. A., Jul 11 2018, In : Breast Cancer Research. 20, 1, 71.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Neoplasms
Staining and Labeling
Microsatellite Instability
Aneuploidy
Linear Models
Research Personnel
Phylogeography
Viruses
West Nile virus
11 Citations (Scopus)

The evolutionary history of Nebraska deer mice: Local adaptation in the face of strong gene flow

Pfeifer, S., Laurent, S., Sousa, V. C., Linnen, C. R., Foll, M., Excoffier, L., Hoekstra, H. E. & Jensen, J., Apr 1 2018, In : Molecular Biology and Evolution. 35, 4, p. 792-806 15 p.

Research output: Contribution to journalArticle

Peromyscus
Gene Flow
local adaptation
Islands
deer
5 Citations (Scopus)

The fitness landscape of the codon space across environments

Fragata, I., Matuszewski, S., Schmitz, M. A., Bataillon, T., Jensen, J. & Bank, C., Jan 1 2018, (Accepted/In press) In : Heredity.

Research output: Contribution to journalArticle

Codon
Mutation
Amino Acids
Markov Chains
Saccharomyces cerevisiae
5 Citations (Scopus)

The glocal curriculum: A model for transnational collaboration in higher education for sustainable development

Caniglia, G., John, B., Bellina, L., Lang, D. J., Wiek, A., Cohmer, S. & Laubichler, M., Jan 10 2018, In : Journal of Cleaner Production. 171, p. 368-376 9 p.

Research output: Contribution to journalArticle

higher education
curriculum
Curricula
Sustainable development
sustainable development

The impact of within-host ecology on the fitness of a drug-resistant parasite

Huijben, S., Chan, B. H. K., Nelson, W. A. & Read, A. F., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 127-137 11 p.

Research output: Contribution to journalArticle

Open Access
Ecology
parasite
Parasites
drug
fitness
6 Citations (Scopus)

The importance of the Neutral Theory in 1968 and 50 years on: a response to Kern and Hahn 2018

Jensen, J., Payseur, B. A., Stephan, W., Aquadro, C. F., Lynch, M., Charlesworth, D. & Charlesworth, B., Jan 1 2018, (Accepted/In press) In : Evolution.

Research output: Contribution to journalArticle

Molecular Evolution
Genetic Selection
natural selection
Genome
genome
5 Citations (Scopus)

The role of gene flow in rapid and repeated evolution of cave-related traits in Mexican tetra, Astyanax mexicanus

Herman, A., Brandvain, Y., Weagley, J., Jeffery, W. R., Keene, A. C., Kono, T. J. Y., Bilandžija, H., Borowsky, R., Espinasa, L., O'Quin, K., Ornelas-García, C. P., Yoshizawa, M., Carlson, B., Maldonado, E., Gross, J. B., Cartwright, R., Rohner, N., Warren, W. C. & McGaugh, S. E., Jan 1 2018, (Accepted/In press) In : Molecular Ecology.

Research output: Contribution to journalArticle

Gene Flow
caves
gene flow
cave
Population
1 Citation (Scopus)

The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells

Olney, K. C., Nyer, D. B., Vargas, D. A., Wilson Sayres, M. & Haynes, K., Sep 25 2018, In : BMC Systems Biology. 12, 1, 83.

Research output: Contribution to journalArticle

Interferons
Transcription factors
Transcription Factor
Breast Cancer
Regulator