CLAS-NS: Evolution and Medicine, Center for

Research Output 1998 2019

2019

Computational history of knowledge: Challenges and opportunities

Laubichler, M., Maienschein, J. & Renn, J., Sep 1 2019, In : ISIS. 110, 3, p. 502-512 11 p.

Research output: Contribution to journalArticle

twenty first century
fighting
history
methodology
History of Knowledge

Computed tomography shows high fracture prevalence among physically active forager-horticulturalists with high fertility

HORUS Study Team, Aug 16 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
Bone Density
Tomography
Fertility
Bone
Minerals
1 Citation (Scopus)

Data Management and Data Sharing in Science and Technology Studies

Maienschein, J., Parker, J. N., Laubichler, M. & Hackett, E. J., Jan 1 2019, In : Science Technology and Human Values. 44, 1, p. 143-160 18 p.

Research output: Contribution to journalArticle

technology studies
science studies
Information management
management
science
1 Citation (Scopus)

Energy oversupply to tissues: A single mechanism possibly underlying multiple cancer risk factors

Wu, D. J., Aktipis, C. A. & Pepper, J. W., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

Open Access
risk factor
cancer
risk factors
somatic cells
neoplasms

Evolutionary origins of polycystic ovary syndrome: An environmental mismatch disorder

Charifson, M. A. & Trumble, B., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 50-63 14 p.

Research output: Contribution to journalReview article

Open Access
polycystic ovary syndrome
Polycystic Ovary Syndrome
human evolution
obesity
etiology

Focus: Computational history and philosophy of science

Gibson, A., Laubichler, M. & Maienschein, J., Sep 1 2019, In : ISIS. 110, 3, p. 497-501 5 p.

Research output: Contribution to journalArticle

history
technological development
data management
historical record
science

Inferring demography and selection in organisms characterized by skewed offspring distributions

Sackman, A. M., Harris, R. B. & Jensen, J., Mar 1 2019, In : Genetics. 211, 3, p. 1019-1028 10 p.

Research output: Contribution to journalArticle

Demography
Metagenomics
Aquatic Organisms
Influenza A virus
Population Genetics
1 Citation (Scopus)

Kin terms and fitness interdependence

Cronk, L., Steklis, D., Steklis, N., van den Akker, O. & Aktipis, C. A., Jan 1 2019, (Accepted/In press) In : Evolution and Human Behavior.

Research output: Contribution to journalArticle

Anthropology
Marriage
Terminology
genetic relationships
fitness
10 Citations (Scopus)

Linking a mutation to survival in wild mice

Barrett, R. D. H., Laurent, S., Mallarino, R., Pfeifer, S., Xu, C. C. Y., Foll, M., Wakamatsu, K., Duke-Cohan, J. S., Jensen, J. & Hoekstra, H. E., Feb 1 2019, In : Science. 363, 6426, p. 499-504 6 p.

Research output: Contribution to journalArticle

Genetic Selection
Color
Phenotype
Mutation
Pigmentation

Mapping the potential use of endectocide-treated cattle to reduce malaria transmission

Imbahale, S. S., Montaña Lopez, J., Brew, J., Paaijmans, K., Rist, C. & Chaccour, C., Dec 1 2019, In : Scientific reports. 9, 1, 5826.

Research output: Contribution to journalArticle

Open Access
Malaria
Western Africa
Eastern Africa
Anopheles
Africa South of the Sahara

Methodological differences cannot explain associations between health, anthropometrics, and excess resting metabolic rate

Gurven, M., Trumble, B., Stieglitz, J., Cummings, D., Kaplan, H., Blackwell, A. D., Yetish, G. & Pontzer, H., May 1 2019, In : American journal of physical anthropology. 169, 1, p. 197-198 2 p.

Research output: Contribution to journalLetter

Basal Metabolism
Health
health

Molecular analysis of muscle progenitor cells on extracellular matrix coatings and hydrogels

Palade, J., Pal, A., Rawls, J., Stabenfeldt, S. & Wilson-Rawls, N., Jan 1 2019, (Accepted/In press) In : Acta Biomaterialia.

Research output: Contribution to journalArticle

Hydrogels
Muscle Cells
Extracellular Matrix
Muscle
Stem Cells
3 Citations (Scopus)

Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody

Prachanronarong, K. L., Canale, A. S., Liu, P., Somasundaran, M., Hou, S., Poh, Y. P., Han, T., Zhu, Q., Renzette, N., Zeldovich, K. B., Kowalik, T. F., Kurt-Yilmaz, N., Jensen, J., Bolon, D. N. A., Marasco, W. A., Finberg, R. W., Schiffer, C. A. & Wang, J. P., Jan 1 2019, In : Journal of Virology. 93, 2, e01639-18.

Research output: Contribution to journalArticle

sialidase
Influenza A virus
Hemagglutinins
hemagglutinins
neutralization
1 Citation (Scopus)

Smart Stadia as Testbeds for Smart Cities: Enriching Fan Experiences and Improving Accessibility

Panchanathan, S., McDaniel, T., Tadayon, R., Rukkila, A. & Demakethepalli Venkateswara, H., Apr 8 2019, 2019 International Conference on Computing, Networking and Communications, ICNC 2019. Institute of Electrical and Electronics Engineers Inc., p. 542-546 5 p. 8685580. (2019 International Conference on Computing, Networking and Communications, ICNC 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stadiums
Testbeds
Fans
Waste management
Virtual reality
Open Access
Microbiota
microorganisms
neoplasms
energy
Growth

The smoke detector principle

Nesse, R., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access
smoke
Smoke
detectors
detector

The state of evolutionary medicine in undergraduate education

Grunspan, D. Z., Moeller, K. T., Nesse, R. & Brownell, S., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, p. 82-92 11 p.

Research output: Contribution to journalArticle

Open Access
State Medicine
college students
medicine
education
Medicine

Tinbergen's four questions

Nesse, R., Jan 21 2019, In : Evolution, Medicine and Public Health. 2019, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2018
17 Citations (Scopus)

Adaptive global innovative learning environment for glioblastoma: GBM AGILE

GBM AGILE Network, Feb 15 2018, In : Clinical Cancer Research. 24, 4, p. 737-743 7 p.

Research output: Contribution to journalReview article

Glioblastoma
Learning
Biomarkers
Therapeutics
Random Allocation
19 Citations (Scopus)

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Jones, M. R., Scott Mills, L., Alves, P. C., Callahan, C. M., Alves, J. M., Lafferty, D. J. R., Jiggins, F. M., Jensen, J., Melo-Ferreira, J. & Good, J. M., Jun 22 2018, In : Science. 360, 6395, p. 1355-1358 4 p.

Research output: Contribution to journalArticle

Hares
Molting
Snow
Gene Flow
Seeds
3 Citations (Scopus)

A genetic reconstruction of the invasion of the calanoid copepod Pseudodiaptomus inopinus across the North American Pacific Coast

Dexter, E., Bollens, S. M., Cordell, J., Soh, H. Y., Rollwagen-Bollens, G., Pfeifer, S., Goudet, J. & Vuilleumier, S., Jun 1 2018, In : Biological Invasions. 20, 6, p. 1577-1595 19 p.

Research output: Contribution to journalArticle

Copepoda
coasts
coast
ballast water
estuarine ecosystem
3 Citations (Scopus)
Apolipoproteins E
Alzheimer Disease
Alleles
Genotype
Age of Onset
3 Citations (Scopus)

Antibiotic and pesticide susceptibility and the Anthropocene operating space

Living with Resistance project, Nov 1 2018, In : Nature Sustainability. 1, 11, p. 632-641 10 p.

Research output: Contribution to journalReview article

Biocides
biocides
Disinfectants
Antibiotics
Pesticides
3 Citations (Scopus)

Bioinformatics core competencies for undergraduate life sciences education

Wilson Sayres, M., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Jungck, J. R. & 14 others, Newman, J. D., Pearson, W., Ryder, E. F., Tosado-Acevedo, R., Tapprich, W., Tobin, T. C., Toro-Martínez, A., Welch, L. R., Wright, R., Barone, L., Ebenbach, D., McWilliams, M., Olney, K. C. & Pauley, M. A., Jun 1 2018, In : PLoS One. 13, 6, e0196878.

Research output: Contribution to journalArticle

science education
Problem-Based Learning
Biological Science Disciplines
Computational Biology
college students
4 Citations (Scopus)

Cancer initiation and progression within the cancer microenvironment

Leong, S. P., Aktipis, C. A. & Maley, C., Jul 11 2018, (Accepted/In press) In : Clinical and Experimental Metastasis. p. 1-7 7 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Neoplasms
Growth
Biological Phenomena
Melanoma

Chat-box: Proposing a mood analyzer for individuals with social interaction disabilities

Gupta, B., Saxon, M., McDaniel, T. & Panchanathan, S., Jan 1 2018, HCI International 2018 – Posters’ Extended Abstracts - 20th International Conference, HCI International 2018, Proceedings. Stephanidis, C. (ed.). Springer Verlag, p. 394-401 8 p. (Communications in Computer and Information Science; vol. 851).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mood
Social Interaction
Disability
Assistive Technology
Sentiment Analysis
4 Citations (Scopus)

Coalescent processes with skewed offspring distributions and nonequilibrium demography

Matuszewski, S., Hildebrandt, M. E., Achaz, G. & Jensen, J., Jan 1 2018, In : Genetics. 208, 1, p. 323-338 16 p.

Research output: Contribution to journalArticle

Demography
Genealogy and Heraldry
Population Growth
Ecology
Sequence Analysis
4 Citations (Scopus)

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

Tollis, M., Hutchins, E. D., Stapley, J., Rupp, S. M., Eckalbar, W. L., Maayan, I., Lasku, E., Infante, C. R., Dennis, S. R., Robertson, J. A., May, C. M., Crusoe, M. R., Bermingham, E., Denardo, D., Hsieh, S. T. T., Kulathinal, R. J., McMillan, W. O., Menke, D. B., Pratt, S., Rawls, J. & 5 others, Sanjur, O., Wilson-Rawls, N., Wilson Sayres, M., Fisher, R. E. & Kusumi, K., Feb 1 2018, In : Genome Biology and Evolution. 10, 2, p. 489-506 18 p.

Research output: Contribution to journalArticle

Lizards
Genomics
lizard
Anolis
lizards

Computer Vision for Augmentative and Alternative Communication

Panchanathan, S., Moore, M., Demakethepalli Venkateswara, H., Chakraborty, S. & McDaniel, T., Jan 1 2018, Computer Vision For Assistive Healthcare. Elsevier Inc., p. 211-248 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

visual impairment
alternative technology
communication
communication technology
multimedia
6 Citations (Scopus)

Consumption explains intraspecific variation in nutrient recycling stoichiometry in a desert fish

Moody, E. K., Carson, E. W., Corman, J. R., Espinosa-Pérez, H., Ramos, J., Sabo, J. & Elser, J., Jul 1 2018, In : Ecology. 99, 7, p. 1552-1561 10 p.

Research output: Contribution to journalArticle

intraspecific variation
stoichiometry
recycling
deserts
desert
3 Citations (Scopus)

Coping with iron limitation: a metabolomic study of Synechocystis sp. PCC 6803

Rivas-Ubach, A., Poret-Peterson, A. T., Peñuelas, J., Sardans, J., Pérez-Trujillo, M., Legido-Quigley, C., Oravec, M., Urban, O. & Elser, J., Feb 1 2018, In : Acta Physiologiae Plantarum. 40, 2, 28.

Research output: Contribution to journalArticle

Metabolomics
metabolomics
Cyanobacteria
Synechocystis
Iron
5 Citations (Scopus)

Core principles of evolutionary medicine: A Delphi study

Grunspan, D. Z., Nesse, R., Barnes, M. E. & Brownell, S., Jan 1 2018, In : Evolution, Medicine and Public Health. 2018, 1, p. 13-23 11 p.

Research output: Contribution to journalArticle

Delphi Technique
medicine
Medicine
evolutionary biology
teachers
1 Citation (Scopus)

CORL expression and function in insulin producing neurons reversibly influences adult longevity in Drosophila

Tran, N. L., Goldsmith, S. L., Dimitriadou, A., Takaesu, N. T., Consoulas, C. & Newfeld, S., Sep 1 2018, In : G3: Genes, Genomes, Genetics. 8, 9, p. 2979-2990 12 p.

Research output: Contribution to journalArticle

Drosophila
Insulin
Neurons
Peptides
Brain
2 Citations (Scopus)

CORL expression in the Drosophila central nervous system is regulated by stage specific interactions of intertwined activators and repressors

Tran, N. L., Takaesu, N. T., Cornell, E. F. & Newfeld, S., Jul 1 2018, In : G3: Genes, Genomes, Genetics. 8, 7, p. 2527-2536 10 p.

Research output: Contribution to journalArticle

Mushroom Bodies
Drosophila
Central Nervous System
Insulin
Activin Receptors
8 Citations (Scopus)

Cross-cultural invariances in the architecture of shame

Sznycer, D., Xygalatas, D., Agey, E., Alami, S., An, X. F., Ananyeva, K. I., Atkinson, Q. D., Broitman, B. R., Conte, T. J., Flores, C., Fukushima, S., Hitokoto, H., Kharitonov, A. N., Onyishi, C. N., Onyishi, I. E., Romero, P. P., Schrock, J. M., Snodgrass, J. J., Sugiyama, L. S., Takemura, K. & 6 others, Townsend, C., Zhuang, J. Y., Aktipis, C. A., Cronk, L., Cosmides, L. & Tooby, J., Sep 25 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. 9702-9707 6 p.

Research output: Contribution to journalArticle

Shame
Cultural Evolution
Theft
Action Potentials
Language
4 Citations (Scopus)

Deep active learning for image classification

Ranganathan, H., Demakethepalli Venkateswara, H., Chakraborty, S. & Panchanathan, S., Feb 20 2018, 2017 IEEE International Conference on Image Processing, ICIP 2017 - Proceedings. IEEE Computer Society, Vol. 2017-September. p. 3934-3938 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image classification
Bayesian networks
Image recognition
Learning algorithms
Computer vision

Deep reinforcement learning methods for navigational aids

Fakhri, B., Keech, A., Schlosser, J., Brooks, E., Demakethepalli Venkateswara, H., Panchanathan, S. & Kira, Z., Jan 1 2018, Smart Multimedia - 1st International Conference, ICSM 2018, Revised Selected Papers. Berretti, S. & Basu, A. (eds.). Springer Verlag, p. 66-75 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11010 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Reinforcement learning
Reinforcement Learning
Navigation
Assistive Technology
Computing Methods

Detecting attention in pivotal response treatment video probes

Heath, C. D. C., Demakethepalli Venkateswara, H., McDaniel, T. & Panchanathan, S., Jan 1 2018, Smart Multimedia - 1st International Conference, ICSM 2018, Revised Selected Papers. Berretti, S. & Basu, A. (eds.). Springer Verlag, p. 248-259 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11010 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Probe
Learning systems
Feedback
Machine Learning
Learning algorithms
1 Citation (Scopus)

Developmental and functional anatomy of the spine

Rawls, J. & Fisher, R. E., Jun 12 2018, The Genetics and Development of Scoliosis: Second Edition. Springer International Publishing, p. 1-29 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anatomy
Spine
7 Citations (Scopus)

Eco-evolutionary dynamics of ecological stoichiometry in plankton communities

Branco, P., Egas, M., Elser, J. & Huisman, J., Jul 1 2018, In : American Naturalist. 192, 1, p. E1-E20

Research output: Contribution to journalArticle

stoichiometry
plankton
phytoplankton
zooplankton
phosphorus
3 Citations (Scopus)

Editorial: Progress in ecological stoichiometry

Van de Waal, D. B., Elser, J., Martiny, A. C., Sterner, R. W. & Cotner, J. B., Sep 5 2018, In : Frontiers in Microbiology. 9, SEP, 1957.

Research output: Contribution to journalEditorial

1 Citation (Scopus)

Effects of rainfall manipulations on carbon exchange of cyanobacteria and moss-dominated biological soil crusts

Zhang, C., Niu, D., Song, M., Elser, J., Okie, J. & Fu, H., Sep 1 2018, In : Soil Biology and Biochemistry. 124, p. 24-31 8 p.

Research output: Contribution to journalArticle

Bryophyta
soil crusts
soil crust
Cyanobacteria
moss

Erratum: Author Correction: 137 ancient human genomes from across the Eurasian steppes (Nature (2018) 557 7705 (369-374))

de Barros Damgaard, P., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasiev, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 57 others, Bazaliiskii, V. I., Beisenov, A., Boldbaatar, B., Boldgiv, B., Dorzhu, C., Ellingvag, S., Erdenebaatar, D., Dajani, R., Dmitriev, E., Evdokimov, V., Frei, K. M., Gromov, A., Goryachev, A., Hakonarson, H., Hegay, T., Khachatryan, Z., Khaskhanov, R., Kitov, E., Kolbina, A., Kubatbek, T., Kukushkin, A., Kukushkin, I., Lau, N., Margaryan, A., Merkyte, I., Mertz, I. V., Mertz, V. K., Mijiddorj, E., Moiyesev, V., Mukhtarova, G., Nurmukhanbetov, B., Orozbekova, Z., Panyushkina, I., Pieta, K., Smrčka, V., Shevnina, I., Logvin, A., Sjogren, K. G., Štolcova, T., Taravella, A. M., Tashbaeva, K., Tkachev, A., Tulegenov, T., Voyakin, D., Yepiskoposyan, L., Undrakhbold, S., Varfolomeev, V., Weber, A., Wilson Sayres, M., Kradin, N., Allentoft, M. E., Orlando, L., Nielsen, R., Sikora, M., Heyer, E., Kristiansen, K. & Willerslev, E., Nov 1 2018, In : Nature. 563, 7729, p. E16

Research output: Contribution to journalComment/debate

Melissa
Biological Science Disciplines
Human Genome
Medicine
Grassland
2 Citations (Scopus)
disaster recovery
disaster
economic recovery
hurricanes
disasters
1 Citation (Scopus)

From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013

Zou, Y. & Laubichler, M., Jul 1 2018, In : PLoS One. 13, 7, e0200929.

Research output: Contribution to journalArticle

Systems Biology
Biological Sciences
Research
Research Personnel
researchers

Functional case study evaluation of the smartgym: An anticipatory system to detect body compliance

Tadayon, A., McDaniel, T. & Panchanathan, S., Oct 15 2018, HealthMedia 2018 - Proceedings of the 3rd International Workshop on Multimedia for Personal Health and Health Care, co-located with MM 2018. Association for Computing Machinery, Inc, p. 67-71 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feedback
Patient rehabilitation
Compliance
6 Citations (Scopus)

Genetic diversity on the sex chromosomes

Wilson Sayres, M., Apr 1 2018, In : Genome Biology and Evolution. 10, 4, p. 1064-1078 15 p.

Research output: Contribution to journalReview article

Sex Chromosomes
sex chromosomes
chromosome
genetic variation
sex determination
1 Citation (Scopus)

Genome sequence of a single-stranded DNA virus identified in Gila monster feces

Somayaji, V., Denardo, D., Wilson Sayres, M., Blake, M., Waits, K., Fontenele, R. S., Kraberger, S. & Varsania, A., Aug 23 2018, In : Microbiology Resource Announcements. 7, 7, e00925-18.

Research output: Contribution to journalArticle

DNA Viruses
Lizards
Single-Stranded DNA
Feces
Reindeer

Haptic vision: Augmenting non-visual travel and accessing environmental information at a distance

Duarte, B., McDaniel, T., Tadayon, R., Devkota, S., Strasser, G., Ramey, C. C. & Panchanathan, S., Jan 1 2018, Smart Multimedia - 1st International Conference, ICSM 2018, Revised Selected Papers. Berretti, S. & Basu, A. (eds.). Springer Verlag, p. 90-101 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11010 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Haptics
Textures
Experiments
Proximity
Texture
6 Citations (Scopus)

Human papilloma virus specific immunogenicity and dysfunction of CD8+ T cells in head and neck cancer

Krishna, S., Ulrich, P., Wilson, E., Parikh, F., Narang, P., Yang, S., Read, A. K., Kim-Schulze, S., Park, J., Posner, M., Wilson Sayres, M., Sikora, A. & Anderson, K., Nov 1 2018, In : Cancer Research. 78, 21, p. 6159-6170 12 p.

Research output: Contribution to journalArticle

Papillomaviridae
Head and Neck Neoplasms
T-Lymphocytes
Human papillomavirus 16
Antigens