CIDSE Departments &ndash; Scholarly Works

2019

Accurate patient-specific machine learning models of glioblastoma invasion using transfer learning

Hu, L. S., Yoon, H., Eschbacher, J. M., Baxter, L. C., Dueck, A. C., Nespodzany, A., Smith, K. A., Nakaji, P., Xu, Y., Wang, L., Karis, J. P., Hawkins-Daarud, A. J., Singleton, K. W., Jackson, P. R., Anderies, B. J., Bendok, B. R., Zimmerman, R. S., Quarles, C., Porter-Umphrey, A. B., Mrugala, M. M. & 11 others, Sharma, A., Hoxworth, J. M., Sattur, M. G., Sanai, N., Koulemberis, P. E., Krishna, C., Mitchell, J. R., Wu, T., Tran, N. L., Swanson, K. R. & Li, J., Jan 1 2019, In : American Journal of Neuroradiology. 40, 3, p. 418-425 8 p.

Research output: Contribution to journal › Article

Open Access

Glioblastoma

Cell Count

Neoplasms

Image-Guided Biopsy

Diffusion Tensor Imaging

Action-Stage Emphasized Spatiotemporal VLAD for Video Action Recognition

Tu, Z., Li, H., Zhang, D., Dauwels, J., Li, B. & Yuan, J., Jun 1 2019, In : IEEE Transactions on Image Processing. 28, 6, p. 2799-2812 14 p., 8600333.

Research output: Contribution to journal › Article

Sampling

Neural networks

Image recognition

Kinetics

Experiments

A deterministic approach for approximating the diurnal cycle of precipitation for use in large-scale hydrological modeling

Bohn, T. J., Whitney, K. M., Mascaro, G. & Vivoni, E., Feb 1 2019, In : Journal of Hydrometeorology. 20, 2, p. 297-317 21 p.

Research output: Contribution to journal › Article

hydrological modeling

climate

simulation

snow accumulation

throughfall

1 Citation (Scopus)

An enriched approach for modeling multiscale discrete-fracture/matrix interaction for unconventional-reservoir simulations

Xia, Y., Jin, Y., Chen, M. & Chen, K., Feb 1 2019, In : SPE Journal. 24, 1, p. 349-374 26 p.

Research output: Contribution to journal › Article

fracture network

matrix

modeling

simulation

fractured medium

1 Citation (Scopus)

A survey of variational and CNN-based optical flow techniques

Tu, Z., Xie, W., Zhang, D., Poppe, R., Veltkamp, R. C., Li, B. & Yuan, J., Mar 1 2019, In : Signal Processing: Image Communication. 72, p. 9-24 16 p.

Research output: Contribution to journal › Article

Optical flows

Neural networks

Motion estimation

Computer vision

Image processing

Comparing D-optimal designs with common mixture experimental designs for logistic regression

Mancenido, M., Pan, R., Montgomery, D. & Anderson-Cook, C. M., Apr 15 2019, In : Chemometrics and Intelligent Laboratory Systems. 187, p. 11-18 8 p.

Research output: Contribution to journal › Article

Design of experiments

Logistics

Optimal design

Experiments

Control flow checking or not? (for Soft Errors)

Rhisheekesan, A., Jeyapaul, R. & Shrivastava, A., Feb 1 2019, In : ACM Transactions on Embedded Computing Systems. 18, 1, 11.

Research output: Contribution to journal › Article

Flow control

Chlorofluorocarbons

Hardware

Chemical analysis

Costs

Data-adaptive low-rank modeling and external gradient prior for single image super-resolution

Chang, K., Zhang, X., Ding, P. L. K. & Li, B., Aug 1 2019, In : Signal Processing. 161, p. 36-49 14 p.

Research output: Contribution to journal › Article

Optical resolving power

Image resolution

Pixels

Design for customer responsiveness: Decision support system for push–pull supply chains with multiple demand fulfillment points

Fowler, J., Kim, S. H. & Shunk, D., Jan 1 2019, In : Decision Support Systems. 113071.

Research output: Contribution to journal › Article

Time Management

Decision support systems

Supply chains

Semiconductors

Decision Support Techniques

Differences in visitor characteristics and experiences on episodic free admission days

Bowman, C. D. D., Adkins, A., Owen, B. L., Rogers, K. J., Escalante, E., Bowman, J., Nelson, B. & Stoltman, A., Jan 1 2019, In : Museum Management and Curatorship.

Research output: Contribution to journal › Article

museum

group behavior

decision making

Admission

history

Evaluating Docker storage performance: from workloads to graph drivers

Tarasov, V., Rupprecht, L., Skourtis, D., Li, W., Rangaswami, R. & Zhao, M., Jan 1 2019, (Accepted/In press) In : Cluster Computing.

Research output: Contribution to journal › Article

Containers

Storage management

Information management

Exome Sequencing of Two Siblings with Sporadic Autism Spectrum Disorder and Severe Speech Sound Disorder Suggests Pleiotropic and Complex Effects

Peter, B., Dinu, V., Liu, L., Huentelman, M., Naymik, M., Lancaster, H., Vose, C. & Schrauwen, I., Jan 1 2019, In : Behavior Genetics.

Research output: Contribution to journal › Article

Exome

Siblings

Apraxias

childhood

gene

1 Citation (Scopus)

Exploring the Sensitivity of Choropleths under Attribute Uncertainty

Huang, Z., Lu, Y., Mack, E., Chen, W. & Maciejewski, R., Jan 1 2019, (Accepted/In press) In : IEEE Transactions on Visualization and Computer Graphics.

Research output: Contribution to journal › Article

Visualization

Data visualization

Autocorrelation

Uncertainty

Statistical methods

First-order stable model semantics with intensional functions

Bartholomew, M. & Lee, J., Aug 1 2019, In : Artificial Intelligence. 273, p. 56-93 38 p.

Research output: Contribution to journal › Article

Programming theory

Semantics

semantics

programming

Electric grounding

GFCache: A greedy failure cache considering failure recency and failure frequency for an erasure-coded storage system

Deng, M., Liu, F., Zhao, M., Chen, Z. & Xiao, N., Jan 1 2019, In : Computers, Materials and Continua. 58, 1, p. 153-167 15 p.

Research output: Contribution to journal › Article

Open Access

Storage System

Cache

Recovery

Caching

Hits

1 Citation (Scopus)

Hierarchical Image Semantics using Probabilistic Path Propagations for Biomedical Research

Gillmann, C., Post, T., Wischgoll, T., Hagen, H. & Maciejewski, R., Jan 1 2019, (Accepted/In press) In : IEEE Computer Graphics and Applications.

Research output: Contribution to journal › Article

Image segmentation

Semantics

Electric fuses

Tumors

Communication

1 Citation (Scopus)

How does mobility help distributed systems compute?

Vining, W. F., Esponda, F., Moses, M. E. & Forrest, S., Jan 1 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1774, 20180375.

Research output: Contribution to journal › Article

Computer Communication Networks

Brain

brain

Cellular automata

Liquids

1 Citation (Scopus)

Infrastructure and the environment in the Anthropocene

Chester, M., Markolf, S. & Allenby, B., Jan 1 2019, In : Journal of Industrial Ecology.

Research output: Contribution to journal › Article

infrastructure

human activity

integrated system

management

water management

1 Citation (Scopus)

Integrated analysis of productivity and machine condition degradation: Performance evaluation and bottleneck identification

Kang, Y. & Ju, F., Jan 1 2019, (Accepted/In press) In : IISE Transactions.

Research output: Contribution to journal › Article

Productivity

Degradation

Industrial plants

Agglomeration

Decision making

1 Citation (Scopus)

Knowledge infrastructure and safe operating spaces in social–ecological systems

Anderies, J., Mathias, J. D. & Janssen, M., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 12, p. 5277-5284 8 p.

Research output: Contribution to journal › Article

Open Access

Uncertainty

Decision Making

Natural Resources

Operationalizing the feedback between institutional decision-making, socio-political infrastructure, and environmental risk in urban vulnerability analysis

Baeza-Castro, A., Bojorquez-Tapia, L. A., Janssen, M. & Eakin, H., Jul 1 2019, In : Journal of Environmental Management. 241, p. 407-417 11 p.

Research output: Contribution to journal › Article

environmental risk

vulnerability

Decision making

decision making

infrastructure

Overlaying multiple sources of data to identify bottlenecks in clinical workflow

Vankipuram, A., Patel, V., Traub, S. & Shortliffe, E. H., Mar 1 2019, In : Journal of Biomedical Informatics: X. 1, 100004.

Research output: Contribution to journal › Article

Open Access

Workflow

Information Storage and Retrieval

Health

Electronic Health Records

Sensors

Quantitative study in shale gas behaviors using a coupled triple-continuum and discrete fracture model

Wei, S., Xia, Y., Jin, Y., Chen, M. & Chen, K., Mar 1 2019, In : Journal of Petroleum Science and Engineering. 174, p. 49-69 21 p.

Research output: Contribution to journal › Article

Desorption

desorption

Shale

Gases

shale

Real-Time Monitoring and Control of Urea Hydrolysis in Cyber-Enabled Nonwater Urinal System

Saetta, D., Padda, A., Li, X., Leyva, C., Mirchandani, P., Boscovic, D. & Boyer, T., Mar 19 2019, In : Environmental Science and Technology. 53, 6, p. 3187-3197 11 p.

Research output: Contribution to journal › Article

urea

Urea

hydrolysis

Hydrolysis

Monitoring

Relay node placement under budget constraint

Zhou, C., Mazumder, A., Das, A., Basu, K., Matin-Moghaddam, N., Mehrani, S. & Sen, A., Feb 1 2019, In : Pervasive and Mobile Computing. 53, p. 1-12 12 p.

Research output: Contribution to journal › Article

Budget Constraint

Connectedness

Relay

Placement

Vertex of a graph

Robot learning of manipulation activities with overall planning through precedence graph

Ye, X., Lin, Z. & Yang, Y., Jun 1 2019, In : Robotics and Autonomous Systems. 116, p. 126-135 10 p.

Research output: Contribution to journal › Article

Robot learning

Manipulation

Robot

Planning

Robots

Seeing the forest through the trees

Muchlinski, D. A., Siroky, D., He, J. & Kocher, M. A., Jan 1 2019, In : Political Analysis. 27, 1, p. 111-113 3 p.

Research output: Contribution to journal › Article

Self-diffusion in compressible gas flow through a microconduit

Shen, D. & Chen, K., Feb 1 2019, In : Physical Review Fluids. 4, 2

Research output: Contribution to journal › Article

Self-diffusion

Compressible Flow

Gas Flow

Slip Condition

Flow Rate

Strategies to Improve and Evaluate Physics-Based Hyperresolution Hydrologic Simulations at Regional Basin Scales

Ko, A., Mascaro, G. & Vivoni, E., Jan 1 2019, In : Water Resources Research.

Research output: Contribution to journal › Article

physics

basin

simulation

land surface

surface temperature

TD-OCBA: Optimal computing budget allocation and time dilation for simulation optimization of manufacturing systems

Zhu, Y., Pedrielli, G. & Hay Lee, L., Mar 4 2019, In : IISE Transactions. 51, 3, p. 219-231 13 p.

Research output: Contribution to journal › Article

Time series

Experiments

Discrete event simulation

Analytical models

Simulators

The transformation of the k-Shortest Steiner trees search problem into binary dynamic problem for effective evolutionary methods application

Przewoźniczek, M. W., Walkowiak, K., Sen, A., Komarnicki, M. & Lechowicz, P., Apr 1 2019, In : Information Sciences. 479, p. 1-19 19 p.

Research output: Contribution to journal › Article

Steiner Tree

Search Problems

Dynamic Problem

Fiber optic networks

Telecommunication networks

Transient analysis and real-time control of geometric serial lines with residence time constraints

Wang, F., Ju, F. & Kang, N., Jan 1 2019, (Accepted/In press) In : IISE Transactions.

Research output: Contribution to journal › Article

Real time control

Transient analysis

Markov processes

Learning algorithms

Structural properties

12 Citations (Scopus)

Urban form and composition of street canyons: A human-centric big data and deep learning approach

Middel, A., Lukasczyk, J., Zakrzewski, S., Arnold, M. & Maciejewski, R., Mar 1 2019, In : Landscape and Urban Planning. 183, p. 122-132 11 p.

Research output: Contribution to journal › Article

street canyon

learning

pedestrian

field of view

void

Use of supply chain planning tools for efficiently placing small farmers into high-value, vegetable markets

Flores, H., Villalobos, J., Ahumada, O., Uchanski, M., Meneses, C. & Sanchez, O., Feb 1 2019, In : Computers and Electronics in Agriculture. 157, p. 205-217 13 p.

Research output: Contribution to journal › Article

Vegetables

supply chain

Agriculture

Supply chains

vegetable

Using network motifs to characterize temporal network evolution leading to diffusion inhibition

Sarkar, S., Guo, R. & Shakarian, P., Dec 1 2019, In : Social Network Analysis and Mining. 9, 1, 14.

Research output: Contribution to journal › Article

social network

Reinforcement

interaction

movies

reinforcement

2018

A 34-FPS 698-GOP/s/W Binarized Deep Neural Network-based Natural Scene Text Interpretation Accelerator for Mobile Edge Computing

Li, Y., Liu, Z., Liu, W., Jiang, Y., Wang, Y., Goh, W. L., Yu, H. & Ren, F., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Industrial Electronics.

Research output: Contribution to journal › Article

Particle accelerators

Energy efficiency

Servers

Throughput

Architectural design

A clarification on the conditions for the Gassmann equations

Chen, K., Jan 1 2018, In : Journal of Porous Media. 21, 10, p. 993-998 6 p.

Research output: Contribution to journal › Article

Poroelasticity

constitutive equations

Constitutive Equation

Constitutive equations

derivation

2 Citations (Scopus)

A Compiler Technique for Processor-Wide Protection From Soft Errors in Multithreaded Environments

Didehban, M. & Shrivastava, A., Feb 9 2018, (Accepted/In press) In : IEEE Transactions on Reliability.

Research output: Contribution to journal › Article

Microprocessor chips

Transistors

Data storage equipment

Experiments

1 Citation (Scopus)

A cross-study analysis for reproducible sub-classification of traumatic brain injury

Si, B., Dumkrieger, G., Wu, T., Zafonte, R., Dodick, D. W., Schwedt, T. J. & Li, J., Aug 13 2018, In : Frontiers in Neurology. 9, AUG, 606.

Research output: Contribution to journal › Article

Trail Making Test

Glasgow Outcome Scale

Cytidine Diphosphate Choline

Closed Head Injuries

Traumatic Brain Injury

3 Citations (Scopus)

Activity-based DEVS modeling

Alshareef, A., Sarjoughian, H. & Zarrin, B., Mar 1 2018, In : Simulation Modelling Practice and Theory. 82, p. 116-131 16 p.

Research output: Contribution to journal › Article

Modeling

Behavioral Modeling

Model Driven Architecture

Model

Metamodel

A Deep Learning Approach for Targeted Contrast-Enhanced Ultrasound Based Prostate Cancer Detection

Feng, Y., Yang, F., Zhou, X., Guo, Y., Tang, F., Ren, F., Guo, J. & Ji, S., May 11 2018, (Accepted/In press) In : IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Research output: Contribution to journal › Article

Prostate Cancer

Ultrasound

Ultrasound Image

Prostatic Neoplasms

Ultrasonics

2 Citations (Scopus)

A framework for real-time monitoring of energy efficiency of marine vessels

Chi, H., Pedrielli, G., Ng, S. H., Kister, T. & Bressan, S., Feb 15 2018, In : Energy. 145, p. 246-260 15 p.

Research output: Contribution to journal › Article

Energy efficiency

Fuel consumption

Monitoring

Carbon dioxide

Ships

7 Citations (Scopus)

A GPU-outperforming FPGA accelerator architecture for binary convolutional neural networks

Li, Y., Liu, Z., Xu, K., Yu, H. & Ren, F., Jul 1 2018, In : ACM Journal on Emerging Technologies in Computing Systems. 14, 2, 3154839.

Research output: Contribution to journal › Article

Particle accelerators

Field programmable gate arrays (FPGA)

Neural networks

Energy efficiency

Throughput

12 Citations (Scopus)

ALAMO: FPGA acceleration of deep learning algorithms with a modularized RTL compiler

Ma, Y., Suda, N., Cao, Y., Vrudhula, S. & Seo, J., Jan 1 2018, (Accepted/In press) In : Integration, the VLSI Journal.

Research output: Contribution to journal › Article

Learning algorithms

Field programmable gate arrays (FPGA)

Neural networks

Throughput

Hardware

2 Citations (Scopus)

A method for the analysis and visualization of clinical workflow in dynamic environments

Vankipuram, A., Traub, S. & Patel, V., Mar 1 2018, In : Journal of Biomedical Informatics. 79, p. 20-31 12 p.

Research output: Contribution to journal › Article

Workflow

Visualization

Hospital Emergency Service

Cultural Anthropology

Electronic Health Records

1 Citation (Scopus)

Analysing robustness in intra-dependent and inter-dependent networks using a new model of interdependency

Banerjee, J., Basu, K. & Sen, A., Jan 1 2018, In : International Journal of Critical Infrastructures. 14, 2, p. 156-181 26 p.

Research output: Contribution to journal › Article

communication network

heuristics

Telecommunication networks

Critical infrastructures

Computational complexity

5 Citations (Scopus)

An integrated view of complex landscapes: A big data-model integration approach to transdisciplinary science

Peters, D. P. C., Burruss, N. D., Rodriguez, L. L., McVey, D. S., Elias, E. H., Pelzel-Mccluskey, A. M., Derner, J. D., Schrader, T. S., Yao, J., Pauszek, S. J., Lombard, J., Archer, S. R., Bestelmeyer, B. T., Browning, D. M., Brungard, C. W., Hatfield, J. L., Hanan, N. P., Herrick, J. E., Okin, G. S., Sala, O. & 2 others, Savoy, H. & Vivoni, E., Jan 1 2018, In : BioScience. 68, 9, p. 653-669 17 p.

Research output: Contribution to journal › Article

Systems Integration

Management Information Systems

Biological Phenomena

Imagery (Psychotherapy)

management information systems

4 Citations (Scopus)