Research Output 1992 2019

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2019
2 Citations (Scopus)

Adverse Drug Events Detection in Clinical Notes by Jointly Modeling Entities and Relations Using Neural Networks

Dandala, B., Joopudi, V. & Devarakonda, M., Jan 1 2019, (Accepted/In press) In : Drug Safety.

Research output: Contribution to journalArticle

Drug-Related Side Effects and Adverse Reactions
Neural networks
Pharmaceutical Preparations
Joints
Long-Term Memory

An interprofessional education pilot program on screening, brief intervention, and referral to treatment (SBIRT) improves student knowledge, skills, and attitudes

van Eeghen, C., Hitt, J., King, J. G., Atieno Okech, J. E., Rouleau, B., Melekis, K., Kessler, R. & Pinckney, R., Jan 1 2019, In : International Journal of Higher Education. 8, 1, p. 119-132 14 p.

Research output: Contribution to journalArticle

graduate
ability
education
student
medicine

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature

Magge, A., Weissenbacher, D., Sarker, A., Scotch, M. & Gonzalez-Hernandez, G., Jan 1 2019, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 24, p. 100-111 12 p.

Research output: Contribution to journalArticle

Geographic Locations
Neural Networks (Computer)
Natural Language Processing
Phylogeography
Nucleic Acid Databases
1 Citation (Scopus)

Evaluating the Quality of Health Information in a Changing Digital Ecosystem

Keselman, A., Arnott Smith, C., Murcko, A. C. & Kaufman, D., Feb 8 2019, In : Journal of medical Internet research. 21, 2, p. e11129

Research output: Contribution to journalArticle

Open Access
Ecosystem
Dietary Supplements
Health
Consumer Health Information
Anecdotes

Exome Sequencing of Two Siblings with Sporadic Autism Spectrum Disorder and Severe Speech Sound Disorder Suggests Pleiotropic and Complex Effects

Peter, B., Dinu, V., Liu, L., Huentelman, M., Naymik, M., Lancaster, H., Vose, C. & Schrauwen, I., Jan 1 2019, In : Behavior Genetics.

Research output: Contribution to journalArticle

Exome
Siblings
Apraxias
childhood
gene
Open Access
Online Systems
Hepatitis Viruses
Multimedia
Information Dissemination
Continuing Education

Measuring the integration of primary care and behavioral health services

Mullin, D. J., Hargreaves, L., Auxier, A., Brennhofer, S. A., Hitt, J. R., Kessler, R., Littenberg, B., Macchi, C., Martin, M., Rose, G., Trembath, F. & van Eeghen, C., Jan 1 2019, In : Health Services Research.

Research output: Contribution to journalArticle

Health Services
Primary Health Care
Statistical Factor Analysis
Health Resources
Information Storage and Retrieval

Neutralizing the polarization effect of diamond diode detectors using periodic forward bias pulses

Holmes, J. M., Dutta, M., Koeck, F. A., Benipal, M. K., Hathwar, R., Brown, J., Fox, B., Johnson, H., Zaniewski, A., Alarcon, R., Chowdhury, S., Goodnick, S. & Nemanich, R., Apr 1 2019, In : Diamond and Related Materials. 94, p. 162-165 4 p.

Research output: Contribution to journalArticle

Diamond
Diamonds
Diodes
Polarization
Detectors

Organized Social Activity, Physical Exercise, and the Risk of Insomnia Symptoms Among Community-Dwelling Older Adults

Endeshaw, Y. W. & Yoo, W., Jul 1 2019, In : Journal of Aging and Health. 31, 6, p. 989-1001 13 p.

Research output: Contribution to journalArticle

Independent Living
physical exercise
Sleep Initiation and Maintenance Disorders
Exercise
community

Overlaying multiple sources of data to identify bottlenecks in clinical workflow

Vankipuram, A., Patel, V., Traub, S. & Shortliffe, E. H., Mar 1 2019, In : Journal of Biomedical Informatics: X. 1, 100004.

Research output: Contribution to journalArticle

Open Access
Workflow
Information Storage and Retrieval
Health
Electronic Health Records
Sensors
2018
7 Citations (Scopus)

A 4.5 μm PIN diamond diode for detecting slow neutrons

Holmes, J., Dutta, M., Koeck, F. A., Benipal, M., Brown, J., Fox, B., Hathwar, R., Johnson, H., Malakoutian, M., Saremi, M., Zaniewski, A., Alarcon, R., Chowdhury, S., Goodnick, S. & Nemanich, R., Sep 21 2018, In : Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 903, p. 297-301 5 p.

Research output: Contribution to journalArticle

thermal neutrons
Diamonds
Neutrons
Diodes
diamonds
1 Citation (Scopus)

A convolutional route to abbreviation disambiguation in clinical text

Joopudi, V., Dandala, B. & Devarakonda, M., Oct 1 2018, In : Journal of Biomedical Informatics. 86, p. 71-78 8 p.

Research output: Contribution to journalArticle

Neural networks
Neural Networks (Computer)
Support vector machines
Learning systems
Datasets
1 Citation (Scopus)
Apolipoproteins E
Alzheimer Disease
Alleles
Genotype
Age of Onset
2 Citations (Scopus)

A method for the analysis and visualization of clinical workflow in dynamic environments

Vankipuram, A., Traub, S. & Patel, V., Mar 1 2018, In : Journal of Biomedical Informatics. 79, p. 20-31 12 p.

Research output: Contribution to journalArticle

Workflow
Visualization
Hospital Emergency Service
Cultural Anthropology
Electronic Health Records

An ensemble of convolutional neural networks for the use in video endoscopy

Aksenov, S. V., Kostin, K. A., Ivanova, A. V., Liang, J. & Zamyatin, A. V., Jan 1 2018, In : Sovremennye Tehnologii v Medicine. 10, 2, p. 7-17 11 p.

Research output: Contribution to journalArticle

Endoscopy
Neural networks
Classifiers
Neural Networks (Computer)
Colonoscopy
3 Citations (Scopus)

A Unified Model of Behavioral Health Integration in Primary Care

McGovern, M., Dent, K. & Kessler, R., Apr 1 2018, In : Academic Psychiatry. 42, 2, p. 265-268 4 p.

Research output: Contribution to journalArticle

Primary Health Care
Health
health

Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes

Adam, D. C., Scotch, M. & MacIntyre, C. R., Nov 1 2018, In : Molecular Biology and Evolution. 35, 11, p. 2607-2617 11 p.

Research output: Contribution to journalArticle

smallpox
Modifier Genes
Phylogeography
Smallpox
modifiers (genes)
1 Citation (Scopus)

Behavioral and mental health risk factor profiles among diverse primary care patients

For The MOHR Study Group, Jun 1 2018, In : Preventive Medicine. 111, p. 21-27 7 p.

Research output: Contribution to journalArticle

Primary Health Care
Mental Health
Hispanic Americans
African Americans
Patient Acceptance of Health Care
3 Citations (Scopus)

Chronic care coordination by integrating care through a team-based, population-driven approach: A case study

Van Eeghen, C. O., Littenberg, B. & Kessler, R., May 23 2018, In : Translational Behavioral Medicine. 8, 3, p. 468-480 13 p.

Research output: Contribution to journalArticle

Population
Workflow
Documentation
Primary Health Care
Community Health Nurses
6 Citations (Scopus)

Clinical decision support models and frameworks: Seeking to address research issues underlying implementation successes and failures

Greenes, R., Bates, D. W., Kawamoto, K., Middleton, B., Osheroff, J. & Shahar, Y., Jan 1 2018, (Accepted/In press) In : Journal of Biomedical Informatics.

Research output: Contribution to journalArticle

Clinical Decision Support Systems
Decision Support Techniques
Research
Interoperability
Workflow
3 Citations (Scopus)

CRAFTER: a Tree-ensemble Clustering Algorithm for Static Datasets with Mixed Attributes and High Dimensionality

Lin, S., Azarnoush, B. & Runger, G., Feb 16 2018, (Accepted/In press) In : IEEE Transactions on Knowledge and Data Engineering.

Research output: Contribution to journalArticle

Clustering algorithms
Data mining
Costs
Experiments

Deep neural networks and distant supervision for geographic location mention extraction

Magge, A., Weissenbacher, D., Sarker, A., Scotch, M. & Gonzalez-Hernandez, G., Jul 1 2018, In : Bioinformatics. 34, 13, p. i565-i573

Research output: Contribution to journalArticle

Geographic Locations
Nucleic Acid Databases
Viruses
Virus
Neural Networks
2 Citations (Scopus)

Design and Testing of a Smartphone Application for Real-Time Self-Tracking Diabetes Self-Management Behaviors

Groat, D., Soni, H., Grando, M., Thompson, B., Kaufman, D. & Cook, C. B., Apr 1 2018, In : Applied Clinical Informatics. 9, 2, p. 440-449 10 p.

Research output: Contribution to journalArticle

Smartphones
Self Care
Medical problems
Testing
Alcohols
1 Citation (Scopus)

Determination of Minority Carrier Lifetime of Holes in Diamond PIN Diodes Using Reverse Recovery Method

Dutta, M., Mandal, S., Hathwar, R., Fischer, A. M., Koeck, F. A. M., Nemanich, R., Goodnick, S. & Chowdhury, S., Feb 9 2018, (Accepted/In press) In : IEEE Electron Device Letters.

Research output: Contribution to journalArticle

Diamond
Carrier lifetime
Diamonds
Time delay
Diodes
1 Citation (Scopus)

Emergency Physicians' Perceived Influence of EHR Use on Clinical Workflow and Performance Metrics

Denton, C. A., Soni, H. C., Kannampallil, T. G., Serrichio, A., Shapiro, J. S., Traub, S. J. & Patel, V., Jul 12 2018, In : Applied Clinical Informatics. 9, 3, p. 725-733 9 p.

Research output: Contribution to journalArticle

Workflow
Electronic Health Records
Emergencies
Health
Physicians
1 Citation (Scopus)

GeoBoost: Accelerating research involving the geospatial metadata of virus GenBank records

Tahsin, T., Weissenbacher, D., O'Connor, K., Magge, A., Scotch, M. & Gonzalez-Hernandez, G., May 1 2018, In : Bioinformatics. 34, 9, p. 1606-1608 3 p.

Research output: Contribution to journalArticle

Nucleic Acid Databases
Metadata
Viruses
Virus
Software

In Search of Vital Signs: A Comparative Study of EHR Documentation

Duncan, B. J., Zheng, L., Furniss, S. K., Solomon, A. J., Doebbeling, B., Grando, G., Burton, M., Poterack, K. A., Miksch, T. A., Helmers, R. A. & Kaufman, D., Jan 1 2018, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018, p. 1233-1242 10 p.

Research output: Contribution to journalArticle

Workflow
Vital Signs
Documentation
Patient Safety
Nursing Assessment

Integrating Active Learning and Transfer Learning for Carotid Intima-Media Thickness Video Interpretation

Zhou, Z., Shin, J., Feng, R., Hurst, R. T., Kendall, C. B. & Liang, J., Jan 1 2018, (Accepted/In press) In : Journal of Digital Imaging.

Research output: Contribution to journalArticle

Carotid Intima-Media Thickness
Problem-Based Learning
Tuning
Neural networks
Ultrasonography
MicroRNAs
Hepatocellular Carcinoma
Gene expression
Cell death
RNA

Multi-Method Study of Electronic Health Records Workflows

Grando, M., Manataki, A., Furniss, S. K., Duncan, B., Solomon, A., Kaufman, D., Hirn, S., Sunday, R., Bouchereau, J., Doebbeling, B., Burton, M., Poterack, K. A., Miksch, T. & Helmers, R. A., Jan 1 2018, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018, p. 498-507 10 p.

Research output: Contribution to journalArticle

Workflow
Electronic Health Records
Social Support
Quality of Health Care
Tertiary Care Centers
1 Citation (Scopus)

Nursing Gender Pay Differentials in the New Millennium

Wilson, B. L., Butler, M. J., Butler, R. J. & Johnson, W., Jan 1 2018, In : Journal of Nursing Scholarship. 50, 1, p. 102-108 7 p.

Research output: Contribution to journalArticle

Salaries and Fringe Benefits
Nursing
Nurses
Occupations
Patient Care
1 Citation (Scopus)

Obesity modifies the stoichiometry of mitochondrial proteins in a way that is distinct to the subcellular localization of the mitochondria in skeletal muscle

Kras, K. A., Langlais, P. R., Hoffman, N., Roust, L. R., Benjamin, T. R., De Filippis, E. A., Dinu, V. & Katsanos, C., Dec 1 2018, In : Metabolism: Clinical and Experimental. 89, p. 18-26 9 p.

Research output: Contribution to journalArticle

Mitochondrial Proteins
Mitochondria
Skeletal Muscle
Obesity
Muscle Mitochondrion

Pathways of topological rank analysis (PoTRA): A novel method to detect pathways involved in hepatocellular carcinoma

Li, C., Liu, L. & Dinu, V., Jan 1 2018, In : PeerJ. 2018, 4, 4571.

Research output: Contribution to journalArticle

hepatoma
Hepatocellular Carcinoma
Genes
neoplasms
Neoplasms
1 Citation (Scopus)

Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform

Morris, S., Subramanian, J., Gel, E., Runger, G., Thompson, E., Mallery, D. & Weiss, G., Apr 1 2018, In : PLoS One. 13, 4, e0196556.

Research output: Contribution to journalArticle

Tumors
neoplasms
Neoplasms
sampling
testing

Phylogeography of H5N1 avian influenza virus in Indonesia

Njoto, E. N., Scotch, M., Bui, C. M., Adam, D. C., Chughtai, A. A. & Macintyre, C. R., Jan 1 2018, (Accepted/In press) In : Transboundary and Emerging Diseases.

Research output: Contribution to journalArticle

Phylogeography
Influenza in Birds
Indonesia
phylogeography
Orthomyxoviridae
2 Citations (Scopus)

Query-by-committee improvement with diversity and density in batch active learning

Kee, S., del Castillo, E. & Runger, G., Jul 1 2018, In : Information Sciences. 454-455, p. 401-418 18 p.

Research output: Contribution to journalArticle

Active Learning
Batch
Query
Uncertainty
Distance Measure
1 Citation (Scopus)

Self-Reported Compensation Techniques for Carbohydrate, Exercise, and Alcohol Behaviors in Patients With Type 1 Diabetes on Insulin Pump Therapy

Groat, D., Soni, H., Grando, M., Thompson, B. & Cook, C. B., Mar 1 2018, In : Journal of diabetes science and technology. 12, 2, p. 412-414 3 p.

Research output: Contribution to journalArticle

Insulin
Carbohydrates
Medical problems
Type 1 Diabetes Mellitus
Alcohols

The effects of random taxa sampling schemes in Bayesian virus phylogeography

Magee, D. & Scotch, M., Oct 1 2018, In : Infection, Genetics and Evolution. 64, p. 225-230 6 p.

Research output: Contribution to journalArticle

Phylogeography
phylogeography
Sample Size
Linear Models
virus
Linear Models
Research Personnel
Phylogeography
Viruses
West Nile virus
4 Citations (Scopus)
Clinical Decision Support Systems
Checklist
Guidelines
Delivery of Health Care
Quality Improvement
3 Citations (Scopus)

U.S. nationwide reconnaissance of ten infrequently monitored antibiotics in municipal biosolids

Magee, H., Maurer, M. M., Cobos, A., Pycke, B. F. G., Venkatesan, A. K., Magee, D., Scotch, M. & Halden, R., Dec 1 2018, In : Science of the Total Environment. 643, p. 460-467 8 p.

Research output: Contribution to journalArticle

Biosolids
biosolid
Sewage sludge
Antibiotics
antibiotics
4 Citations (Scopus)

Whole blood FPR1 mRNA expression predicts both non-small cell and small cell lung cancer

Morris, S., Vachani, A., Pass, H. I., Rom, W. N., Ryden, K., Weiss, G. J., Hogarth, D. K., Runger, G., Richards, D., Shelton, T. & Mallery, D. W., Jun 1 2018, In : International Journal of Cancer. 142, 11, p. 2355-2362 8 p.

Research output: Contribution to journalArticle

Small Cell Lung Carcinoma
Lung Neoplasms
Messenger RNA
Survival Rate
Biomarkers
2017
2 Citations (Scopus)

A Methodology to Compare Insulin Dosing Recommendations in Real-Life Settings

Groat, D., Grando, M., Thompson, B., Neto, P., Soni, H., Boyle, M. E., Bailey, M. & Cook, C. B., Nov 1 2017, In : Journal of diabetes science and technology. 11, 6, p. 1174-1182 9 p.

Research output: Contribution to journalArticle

Insulin
Decision Support Techniques
Glucose
Pumps
Alcohols
1 Citation (Scopus)

A mobile application to support collection and analytics of real-time critical care data

Vankipuram, A., Vankipuram, M., Ghaemmaghami, V. & Patel, V., Nov 1 2017, In : Computer Methods and Programs in Biomedicine. 151, p. 45-55 11 p.

Research output: Contribution to journalArticle

Mobile Applications
Critical Care
Workflow
Wounds and Injuries
Advanced Trauma Life Support Care
11 Citations (Scopus)

Analysis of the reverse I-V characteristics of diamond-based PIN diodes

Saremi, M., Hathwar, R., Dutta, M., Koeck, F. A. M., Nemanich, R., Chowdhury, S. & Goodnick, S., Jul 24 2017, In : Applied Physics Letters. 111, 4, 043507.

Research output: Contribution to journalArticle

diamonds
diodes
defects
thermal conductivity
breakdown
2 Citations (Scopus)

A study to elicit behavioral health patients’ and providers’ opinions on health records consent

Grando, M., Murcko, A., Mahankali, S., Saks, M., Zent, M., Chern, D., Dye, C., Sharp, R., Young, L., Davis, P., Hiestand, M. & Hassanzadeh, N., Jun 1 2017, In : Journal of Law, Medicine and Ethics. 45, 2, p. 238-259 22 p.

Research output: Contribution to journalArticle

Health
Information Dissemination
Patient Preference
Privacy
Health Facilities
14 Citations (Scopus)

Autoantibody biomarkers for the detection of serous ovarian cancer

Katchman, B. A., Chowell, D., Wallstrom, G., Vitonis, A. F., LaBaer, J., Cramer, D. W. & Anderson, K., Jul 1 2017, In : Gynecologic Oncology. 146, 1, p. 129-136 8 p.

Research output: Contribution to journalArticle

Autoantibodies
Ovarian Neoplasms
Biomarkers
Neoplasm Antigens
Serum
1 Citation (Scopus)

Automatic Identification and Quantification of Extra-Well Fluorescence in Microarray Images

Rivera, R., Wang, J., Yu, X., Demirkan, G., Hopper, M., Bian, X., Tahsin, T., Magee, D., Qiu, J., LaBaer, J. & Wallstrom, G., Nov 3 2017, In : Journal of Proteome Research. 16, 11, p. 3969-3977 9 p.

Research output: Contribution to journalArticle

Microarrays
Fluorescence
Biomarkers
Image analysis
Microarray Analysis
4 Citations (Scopus)
Phylogeography
influenza
Influenza
phylogeography
Human Influenza
4 Citations (Scopus)

Characterization of Exercise and Alcohol Self-Management Behaviors of Type 1 Diabetes Patients on Insulin Pump Therapy

Grando, M., Groat, D., Soni, H., Boyle, M., Bailey, M., Thompson, B. & Cook, C. B., Mar 1 2017, In : Journal of diabetes science and technology. 11, 2, p. 240-246 7 p.

Research output: Contribution to journalArticle

Insulin
Self Care
Medical problems
Type 1 Diabetes Mellitus
Alcohols