Biomedical Diagnostics, International School of (ISBD)

Research Output 1995 2018

  • 26 Article
  • 1 Chapter
  • 1 Conference contribution
  • 1 Comment/debate
2018

Correction: Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform(PLoS ONE (2018) 13:4 (e0196556) DOI: 10.1371/journal.pone.0196556)

Morris, S. M., Subramanian, J., Gel, E., Runger, G., Thompson, E. J., Mallery, D. W. & Weiss, G. J., Jun 1 2018, In : PLoS One. 13, 6, e0200224.

Research output: Contribution to journalComment/debate

Names
Tumors
Gels
gels
neoplasms
3 Citations (Scopus)

CRAFTER: a Tree-ensemble Clustering Algorithm for Static Datasets with Mixed Attributes and High Dimensionality

Lin, S., Azarnoush, B. & Runger, G., Feb 16 2018, (Accepted/In press) In : IEEE Transactions on Knowledge and Data Engineering.

Research output: Contribution to journalArticle

Clustering algorithms
Data mining
Costs
Experiments
1 Citation (Scopus)

Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform

Morris, S., Subramanian, J., Gel, E., Runger, G., Thompson, E., Mallery, D. & Weiss, G., Apr 1 2018, In : PLoS One. 13, 4, e0196556.

Research output: Contribution to journalArticle

Tumors
neoplasms
Neoplasms
sampling
testing
2 Citations (Scopus)

Query-by-committee improvement with diversity and density in batch active learning

Kee, S., del Castillo, E. & Runger, G., Jul 1 2018, In : Information Sciences. 454-455, p. 401-418 18 p.

Research output: Contribution to journalArticle

Active Learning
Batch
Query
Uncertainty
Distance Measure
4 Citations (Scopus)

Whole blood FPR1 mRNA expression predicts both non-small cell and small cell lung cancer

Morris, S., Vachani, A., Pass, H. I., Rom, W. N., Ryden, K., Weiss, G. J., Hogarth, D. K., Runger, G., Richards, D., Shelton, T. & Mallery, D. W., Jun 1 2018, In : International Journal of Cancer. 142, 11, p. 2355-2362 8 p.

Research output: Contribution to journalArticle

Small Cell Lung Carcinoma
Lung Neoplasms
Messenger RNA
Survival Rate
Biomarkers
2017
14 Citations (Scopus)

Autoantibody biomarkers for the detection of serous ovarian cancer

Katchman, B. A., Chowell, D., Wallstrom, G., Vitonis, A. F., LaBaer, J., Cramer, D. W. & Anderson, K., Jul 1 2017, In : Gynecologic Oncology. 146, 1, p. 129-136 8 p.

Research output: Contribution to journalArticle

Autoantibodies
Ovarian Neoplasms
Biomarkers
Neoplasm Antigens
Serum
1 Citation (Scopus)

Automatic Identification and Quantification of Extra-Well Fluorescence in Microarray Images

Rivera, R., Wang, J., Yu, X., Demirkan, G., Hopper, M., Bian, X., Tahsin, T., Magee, D., Qiu, J., LaBaer, J. & Wallstrom, G., Nov 3 2017, In : Journal of Proteome Research. 16, 11, p. 3969-3977 9 p.

Research output: Contribution to journalArticle

Microarrays
Fluorescence
Biomarkers
Image analysis
Microarray Analysis
6 Citations (Scopus)

Developing Human Radiation Biodosimetry Models: Testing Cross-Species Conversion Approaches Using an Ex Vivo Model System

Park, J., Paul, S., Briones, N., Zeng, J., Gillis, K., Wallstrom, G., LaBaer, J. & Amundson, S. A., Jun 1 2017, In : Radiation Research. 187, 6, p. 708-721 14 p.

Research output: Contribution to journalArticle

primates
Primates
genes
Radiation
radiation
1 Citation (Scopus)

GCRNN: Group-Constrained Convolutional Recurrent Neural Network

Lin, S. & Runger, G., Dec 7 2017, (Accepted/In press) In : IEEE Transactions on Neural Networks and Learning Systems.

Research output: Contribution to journalArticle

Recurrent neural networks
Network components
Time series
Neural networks
Experiments
3 Citations (Scopus)

Identification of antibody against SNRPB, small nuclear ribonucleoprotein-associated proteins B and B', as an autoantibody marker in Crohn's disease using an immunoproteomics approach

Wang, H., Demirkan, G., Bian, X., Wallstrom, G., Barker, K., Karthikeyan, K., Tang, Y., Pasha, S. F., Leighton, J. A., Qiu, J. & LaBaer, J., 2017, In : Journal of Crohn's and Colitis. 11, 7, p. 848-856 9 p.

Research output: Contribution to journalArticle

snRNP Core Proteins
Crohn Disease
Autoantibodies
Antibodies
Protein Array Analysis
14 Citations (Scopus)

Identification of antibody targets for tuberculosis serology using High-Density Nucleic Acid Programmable Protein Arrays

Song, L., Wallstrom, G., Yu, X., Hopper, M., Van Duine, J., Steel, J., Park, J., Wiktor, P., Kahn, P., Brunner, A., Wilson, D., Jenny-Avital, E. R., Qiu, J., LaBaer, J., Magee, D. & Achkar, J. M., Apr 1 2017, In : Molecular and Cellular Proteomics. 16, 4, p. S277-S289

Research output: Contribution to journalArticle

Protein Array Analysis
Serology
Nucleic Acids
Tuberculosis
HIV
2 Citations (Scopus)

Pre-diagnostic dynamic HPV16 IgG seropositivity and risk of oropharyngeal cancer

Anderson, K., Wallstrom, G., Langseth, H., Posner, M., Cheng, J. N., Alam, R., Chowell, D., Furre, I. E. & Mork, J., Oct 1 2017, In : Oral Oncology. 73, p. 132-137 6 p.

Research output: Contribution to journalArticle

Oropharyngeal Neoplasms
Immunoglobulin G
Odds Ratio
Antibodies
Serum
12 Citations (Scopus)

Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays

Bian, X., Wasserfall, C., Wallstrom, G., Wang, J., Wang, H., Barker, K., Schatz, D., Atkinson, M., Qiu, J. & LaBaer, J., Jan 6 2017, In : Journal of Proteome Research. 16, 1, p. 195-203 9 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Medical problems
Type 1 Diabetes Mellitus
Autoantibodies
Islets of Langerhans
2016
7 Citations (Scopus)

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records

Tahsin, T., Weissenbacher, D., Rivera, R., Beard, R., Firago, M., Wallstrom, G., Scotch, M. & Gonzalez, G., Sep 1 2016, In : Journal of the American Medical Informatics Association. 23, 5, p. 934-941 8 p., ocv172.

Research output: Contribution to journalArticle

Nucleic Acid Databases
Information Storage and Retrieval
Influenza A virus
Databases
Metadata
3 Citations (Scopus)

Automated data mining methods for identifying energy efficiency opportunities using whole-building electricity data

Howard, P., Runger, G., Reddy, T. A. & Katipamula, S., 2016, ASHRAE Transactions - ASHRAE Winter Conference. Amer. Soc. Heating, Ref. Air-Conditoning Eng. Inc., Vol. 122. p. 422-433 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data mining
Energy efficiency
Electricity
Office buildings
Gas emissions
4 Citations (Scopus)

Discovering the Nature of Variation in Nonlinear Profile Data

Shi, Z., Apley, D. W. & Runger, G., Jul 2 2016, In : Technometrics. 58, 3, p. 371-382 12 p.

Research output: Contribution to journalArticle

Monitoring
Supervised learning
Animation
Quality control
Websites

Distinct Variation Pattern Discovery Using Alternating Nonlinear Principal Component Analysis

Howard, P., Apley, D. W. & Runger, G., Oct 26 2016, (Accepted/In press) In : IEEE Transactions on Neural Networks and Learning Systems.

Research output: Contribution to journalArticle

Principal component analysis
Neural networks
Backpropagation

EEG-based user performance prediction using random forest in a dynamic learning environment

Lujan-Moreno, G. A., Atkinson, R. & Runger, G., Jan 1 2016, Intelligent Tutoring Systems: Structure, Applications and Challenges. Nova Science Publishers, Inc., p. 105-128 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Electroencephalography
Power spectral density
Feature extraction
Bandwidth
Sensors
20 Citations (Scopus)

Monitoring temporal homogeneity in attributed network streams

Azarnoush, B., Paynabar, K., Bekki, J. & Runger, G., Jan 1 2016, In : Journal of Quality Technology. 48, 1, p. 28-43 16 p.

Research output: Contribution to journalArticle

Monitoring
Large scale systems
Decision making
Experiments
Homogeneity

Multivariate bounded process adjustment schemes

Govind, N., del Castillo, E., Runger, G. & Janakiram, M., Jul 17 2016, (Accepted/In press) In : Quality Technology and Quantitative Management. p. 1-21 21 p.

Research output: Contribution to journalArticle

Kalman filters
MATLAB
Costs
Semiconductor materials
Controllers

Predictive modeling using a nationally representative database to identify patients at risk of developing microalbuminuria

Villa-Zapata, L., Warholak, T., Slack, M., Malone, D., Murcko, A., Runger, G. & Levengood, M., Feb 1 2016, In : International Urology and Nephrology. 48, 2, p. 249-256 8 p.

Research output: Contribution to journalArticle

Databases
Nutrition Surveys
Blood Pressure
Blood Urea Nitrogen
ROC Curve
1 Citation (Scopus)
Python
Case-control Study
Space-time
Statistics
Clustering
24 Citations (Scopus)

Time series representation and similarity based on local autopatterns

Baydogan, M. G. & Runger, G., Mar 1 2016, In : Data Mining and Knowledge Discovery. 30, 2, p. 476-509 34 p.

Research output: Contribution to journalArticle

Time series
Data mining
Finance
Medicine
Fourier transforms
2013
42 Citations (Scopus)

Serological autoantibody profiling of type 1 diabetes by protein arrays

Miersch, S., Bian, X., Wallstrom, G., Sibani, S., Logvinenko, T., Wasserfall, C. H., Schatz, D., Atkinson, M., Qiu, J. & LaBaer, J., Dec 6 2013, In : Journal of Proteomics. 94, p. 486-496 11 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Medical problems
Type 1 Diabetes Mellitus
Autoantibodies
Autoantigens
2011
145 Citations (Scopus)

Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer

Anderson, K., Sibani, S., Wallstrom, G., Mendoza, E. A., Raphael, J., Hainsworth, E., Montor, W. R., Wong, J., Park, J., Lokko, N., Logvinenko, T., Ramachandran, N., Godwin, A. K., Marks, J., Engstrom, P. & LaBaer, J., Jan 7 2011, In : Journal of Proteome Research. 10, 1, p. 85-96 12 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Biomarkers
Microarrays
Early Detection of Cancer
Autoantibodies
1996
122 Citations (Scopus)

A Markov chain model for the multivariate exponentially weighted moving averages control chart

Runger, G. & Prabhu, S. S., Dec 1996, In : Journal of the American Statistical Association. 91, 436, p. 1701-1706 6 p.

Research output: Contribution to journalArticle

Exponentially Weighted Moving Average Control Chart
Markov Chain Model
Run Length
Control Charts
Markov chain
25 Citations (Scopus)

Controlling multiple stream processes with principal components

Runger, G., Alt, F. B. & Montgomery, D., 1996, In : International Journal of Production Research. 34, 11, p. 2991-2999 9 p.

Research output: Contribution to journalArticle

Statistics
Principal component analysis
Test statistic
Partitioning
Principal components
55 Citations (Scopus)

Foldovers of 2k-p resolution IV experimental designs

Montgomery, D. & Runger, G., Oct 1996, In : Journal of Quality Technology. 28, 4, p. 446-450 5 p.

Research output: Contribution to journalArticle

Experimental design
Design of experiments
Active Set
Fractional Factorial Design
Statistical Software
1995
19 Citations (Scopus)

Statistical process control scheme design

Bert Keats, J., Miskulin, J. D. & Runger, G., Jul 1995, In : Journal of Quality Technology. 27, 3, p. 214-225 12 p.

Research output: Contribution to journalArticle

Statistical Process Control
Statistical process control
Sampling
Methodology
Subgroup