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2020

A Kinesin-3 recruitment complex facilitates axonal sorting of enveloped alpha herpesvirus capsids

Scherer, J., Hogue, I. B., Yaffe, Z. A., Tanneti, N. S., Winer, B. Y., Vershinin, M. & Enquist, L. W., Jan 1 2020, In : PLoS Pathogens. 16, 1, e1007985.

Research output: Contribution to journalArticle

Open Access

Alterations in innate immunity and epithelial cell differentiation are the molecular pillars of hidradenitis suppurativa

Zouboulis, C. C., Nogueira da Costa, A., Makrantonaki, E., Hou, X. X., Almansouri, D., Dudley, J. T., Edwards, H., Readhead, B., Balthasar, O., Jemec, G. B. E., Bonitsis, N. G., Nikolakis, G., Trebing, D., Zouboulis, K. C. & Hossini, A. M., Apr 1 2020, In : Journal of the European Academy of Dermatology and Venereology. 34, 4, p. 846-861 16 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A novel divergent geminivirus identified in asymptomatic New World Cactaceae plants

Fontenele, R. S., Salywon, A. M., Majure, L. C., Cobb, I. N., Bhaskara, A., Avalos-Calleros, J. A., Argüello-Astorga, G. R., Schmidlin, K., Khalifeh, A., Smith, K., Schreck, J., Lund, M. C., Köhler, M., Wojciechowski, M. F., Hodgson, W. C., Puente-Martinez, R., van Doorslaer, K., Kumari, S., Vernière, C., Filloux, D. & 6 others, Roumagnac, P., Lefeuvre, P., Ribeiro, S. G., Kraberger, S., Martin, D. P. & Varsani, A., Apr 2020, In : Viruses. 12, 4, 398.

Research output: Contribution to journalArticle

Open Access

A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant

Orr, A. J., Padovan, A., Kainer, D., Külheim, C., Bromham, L., Bustos-Segura, C., Foley, W., Haff, T., Hsieh, J. F., Morales-Suarez, A., Cartwright, R. A. & Lanfear, R., Mar 11 2020, In : Proceedings of the Royal Society B: Biological Sciences. 287, 1922, 20192364.

Research output: Contribution to journalArticle

Open Access

Binomial nomenclature for virus species: a consultation

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Dutilh, B. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M. L., Rubino, L., Sabanadzovic, S., Simmonds, P., Varsani, A., Zerbini, F. M. & Davison, A. J., Feb 1 2020, In : Archives of virology. 165, 2, p. 519-525 7 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Choline as a prevention for Alzheimer's disease

Velazquez, R., Winslow, W. & Mifflin, M. A., Feb 9 2020, In : Aging. 12, 3, p. 2026-2027 2 p.

Research output: Contribution to journalArticle

Codelivery of improved immune complex and virus-like particle vaccines containing Zika virus envelope domain III synergistically enhances immunogenicity

Diamos, A. G., Pardhe, M. D., Sun, H., Hunter, J. G. L., Mor, T., Meador, L., Kilbourne, J., Chen, Q. & Mason, H. S., Apr 16 2020, In : Vaccine. 38, 18, p. 3455-3463 9 p.

Research output: Contribution to journalArticle

Open Access

Coinfections of novel polyomavirus, anelloviruses and a recombinant strain of myxoma virus-MYXV-tol identified in Iberian hares

Ägueda-Pinto, A., Kraberger, S., Lund, M. C., Gortázar, C., McFadden, G., Varsani, A. & Esteves, P. J., Jan 1 2020, In : Viruses. 12, 3, 340.

Research output: Contribution to journalArticle

Open Access

Discovery of several thousand highly diverse circular DNA viruses

Tisza, M. J., Pastrana, D. V., Welch, N. L., Stewart, B., Peretti, A., Starrett, G. J., Pang, Y. Y. S., Krishnamurthy, S. R., Pesavento, P. A., McDermott, D. H., Murphy, P. M., Whited, J. L., Miller, B., Brenchley, J., Rosshart, S. P., Rehermann, B., Doorbar, J., Ta’ala, B. A., Pletnikova, O., Troncoso, J. C. & 6 others, Resnick, S. M., Bolduc, B., Sullivan, M. B., Varsani, A., Segall, A. M. & Buck, C. B., Feb 2020, In : eLife. 9, e51971.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Double-component diazeniumdiolate derivatives as anti-cancer agents

Ji, X., Chen, Q., Arutla, V., Khdour, O., Hu, Q. Y. & Chen, S., Apr 15 2020, In : Bioorganic and Medicinal Chemistry. 28, 8, 115405.

Research output: Contribution to journalArticle

Electronic Conductance Resonance in Non-Redox-Active Proteins

Zhang, B., Song, W., Brown, J., Nemanich, R. & Lindsay, S., Apr 1 2020, In : Journal of the American Chemical Society. 142, 13, p. 6432-6438 7 p.

Research output: Contribution to journalArticle

Engineering an Enzyme for Direct Electrical Monitoring of Activity

Zhang, B., Deng, H., Mukherjee, S., Song, W., Wang, X. & Lindsay, S., Feb 25 2020, In : ACS nano. 14, 2, p. 1360-1368 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Enhancing antitumor efficacy of nucleoside analog 5-fluorodeoxyuridine on her2-overexpressing breast cancer by affibody-engineered DNA nanoparticle

Zhang, C., Han, M., Zhang, F., Yang, X., Du, J., Zhang, H., Li, W. & Chen, S., Jan 1 2020, In : International journal of nanomedicine. 15, p. 885-900 16 p.

Research output: Contribution to journalArticle

Open Access

Evaluating performance, degradation, and release behavior of a nanoform pigmented coating after natural and accelerated weathering

Lankone, R. S., Ruggiero, E., Goodwin, D. G., Vilsmeier, K., Mueller, P., Pulbere, S., Challis, K., Bi, Y., Westerhoff, P., Ranville, J., Fairbrother, D. H., Sung, L. P. & Wohlleben, W., Jan 2020, In : NanoImpact. 17, 100199.

Research output: Contribution to journalArticle

Open Access

Extracellular vesicle tetraspanin-8 level predicts distant metastasis in non-small cell lung cancer after concurrent chemoradiation

Liu, Y., Fan, J., Xu, T., Ahmadinejad, N., Hess, K., Lin, S. H., Zhang, J., Liu, X., Liu, L., Ning, B., Liao, Z. & Hu, T. Y., Jan 1 2020, In : Science Advances. 6, 11, eaaz6162.

Research output: Contribution to journalArticle

Open Access

Genome characterization of cetaceanpox virus from a managed Indo-Pacific bottlenose dolphin (Tursiops aduncus)

Rodrigues, T. C. S., Subramaniam, K., Varsani, A., McFadden, G., Schaefer, A. M., Bossart, G. D., Romero, C. H. & Waltzek, T. B., Mar 2020, In : Virus research. 278, 197861.

Research output: Contribution to journalArticle

Graphite nanoparticle addition to fertilizers reduces nitrate leaching in growth of lettuce (: Lactuca sativa)

Pandorf, M., Pourzahedi, L., Gilbertson, L., Lowry, G. V., Herckes, P. & Westerhoff, P., Jan 1 2020, In : Environmental Science: Nano. 7, 1, p. 127-138 12 p.

Research output: Contribution to journalArticle

High Level Production of Monoclonal Antibodies Using an Optimized Plant Expression System

Diamos, A. G., Hunter, J. G. L., Pardhe, M. D., Rosenthal, S. H., Sun, H., Foster, B. C., DiPalma, M. P., Chen, Q. & Mason, H. S., Jan 17 2020, In : Frontiers in Bioengineering and Biotechnology. 7, 472.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Immune protection is dependent on the gut microbiome in a lethal mouse gammaherpesviral infection

Yaron, J. R., Ambadapadi, S., Zhang, L., Chavan, R. N., Tibbetts, S. A., Keinan, S., Varsani, A., Maldonado, J., Kraberger, S., Tafoya, A. M., Bullard, W. L., Kilbourne, J., Stern-Harbutte, A., Krajmalnik-Brown, R., Munk, B. H., Koppang, E. O., Lim, E. S. & Lucas, A. R., Dec 1 2020, In : Scientific reports. 10, 1, 2371.

Research output: Contribution to journalArticle

Open Access

Lessons from within: redesigning higher education

Hale, A., Archambault, L. & Wenrick, L., Feb 26 2020, In : Development and Learning in Organizations. 34, 2, p. 37-40 4 p.

Research output: Contribution to journalArticle

Open Access

Magnetic nanoparticle recovery device (MagNERD) enables application of iron oxide nanoparticles for water treatment

Powell, C. D., Atkinson, A. J., Ma, Y., Marcos-Hernandez, M., Villagran, D., Westerhoff, P. & Wong, M. S., Jan 1 2020, In : Journal of Nanoparticle Research. 22, 2, 48.

Research output: Contribution to journalArticle

Mapping the breast cancer metastatic cascade onto ctDNA using genetic and epigenetic clonal tracking

Cresswell, G. D., Nichol, D., Spiteri, I., Tari, H., Zapata, L., Heide, T., Maley, C. C., Magnani, L., Schiavon, G., Ashworth, A., Barry, P. & Sottoriva, A., Dec 1 2020, In : Nature communications. 11, 1, 1446.

Research output: Contribution to journalArticle

Open Access

Modeling wastewater temperature and attenuation of sewage-borne biomarkers globally

Hart, O. E. & Halden, R. U., Apr 1 2020, In : Water Research. 172, 115473.

Research output: Contribution to journalArticle

2 Scopus citations

Niche partitioning with temperature among heterocystous cyanobacteria (Scytonema spp., Nostoc spp., and Tolypothrix spp.) from biological soil crusts

Giraldo-Silva, A., Fernandes, V. M. C., Bethany, J. & Garcia-Pichel, F., Mar 2020, In : Microorganisms. 8, 3, 396.

Research output: Contribution to journalArticle

Open Access

Novel nanovirus and associated alphasatellites identified in milk vetch plants with chlorotic dwarf disease in Iran

Hassan-Sheikhi, P., Heydarnejad, J., Massumi, H., Kraberger, S. & Varsani, A., Jan 15 2020, In : Virus research. 276, 1 p.

Research output: Contribution to journalArticle

One-Step Digital Immunoassay for Rapid and Sensitive Detection of Cardiac Troponin I

Wang, Y., Yang, Y., Chen, C., Wang, S., Wang, H., Jing, W. & Tao, N., Apr 24 2020, In : ACS sensors. 5, 4, p. 1126-1131 6 p.

Research output: Contribution to journalArticle

PIRT the TRP channel regulating protein binds calmodulin and cholesterol-like ligands

Sisco, N. J., Luu, D. D., Kim, M. & Van Horn, W. D., Mar 2020, In : Biomolecules. 10, 3, 478.

Research output: Contribution to journalArticle

Open Access

Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators

Hong, F., Ma, D., Wu, K., Mina, L. A., Luiten, R. C., Liu, Y., Yan, H. & Green, A. A., Mar 5 2020, In : Cell. 180, 5, p. 1018-1032.e16

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Rapid Antibiotic Susceptibility Testing Based on Bacterial Motion Patterns with Long Short- Term Memory Neural Networks

Iriya, R., Jing, W., Syal, K., Mo, M., Chen, C., Yu, H., Haydel, S. E., Wang, S. & Tao, N., May 1 2020, In : IEEE Sensors Journal. 20, 9, p. 4940-4950 11 p., 8962015.

Research output: Contribution to journalArticle

1 Scopus citations

Reliable Breathing Tracking with Wearable Mask Device

Tipparaju, V. V., Xian, X., Bridgeman, D., Wang, D., Tsow, F., Forzani, E. & Tao, N., May 15 2020, In : IEEE Sensors Journal. 20, 10, p. 5510-5518 9 p., 8970244.

Research output: Contribution to journalArticle

Roles of entropic and solvent damping forces in the dynamics of polymer tethered nanoparticles and implications for single molecule sensing

Ma, G., Wan, Z., Zhu, H. & Tao, N., Jan 1 2020, In : Chemical Science. 11, 5, p. 1283-1289 7 p.

Research output: Contribution to journalArticle

Open Access

Sexual dimorphism in atrophic effects of topical glucocorticoids is driven by differential regulation of atrophogene REDD1 in male and female skin

Baida, G., Agarwal, S., Readhead, B., Dudley, J. T. & Budunova, I., Jan 28 2020, In : Oncotarget. 11, 4, p. 409-418 10 p.

Research output: Contribution to journalArticle

Structure-Based Design of Novel Biphenyl Amide Antagonists of Human Transient Receptor Potential Cation Channel Subfamily M Member 8 Channels with Potential Implications in the Treatment of Sensory Neuropathies

Journigan, V. B., Feng, Z., Rahman, S., Wang, Y., Amin, A. R. M. R., Heffner, C. E., Bachtel, N., Wang, S., Gonzalez-Rodriguez, S., Fernández-Carvajal, A., Fernández-Ballester, G., Hilton, J. K., Van Horn, W. D., Ferrer-Montiel, A., Xie, X. Q. & Rahman, T., Feb 5 2020, In : ACS chemical neuroscience. 11, 3, p. 268-290 23 p.

Research output: Contribution to journalArticle

Suppression of water-bloom cyanobacterium Microcystis aeruginosa by algaecide hydrogen peroxide maximized through programmed cell death

Zhou, T., Cao, H., Zheng, J., Teng, F., Wang, X., Lou, K., Zhang, X. & Tao, Y., Jul 5 2020, In : Journal of Hazardous Materials. 393, 122394.

Research output: Contribution to journalArticle

SV40 large T antigen is not responsible for the loss of STING in 293T cells but can inhibit cGAS-STING interferon induction

Reus, J. B., Trivino-Soto, G. S., Wu, L. I., Kokott, K. & Lim, E. S., Jan 1 2020, In : Viruses. 12, 2, v12020137.

Research output: Contribution to journalArticle

Open Access

Symptom evolution following the emergence of maize streak virus

Monjane, A. L., Dellicour, S., Hartnady, P., Oyeniran, K. A., Owor, B. E., Bezeidenhout, M., Linderme, D., Syed, R. A., Donaldson, L., Murray, S., Rybicki, E. P., Kvarnheden, A., Yazdkhasti, E., Lefeuvre, P., Froissart, R., Roumagnac, P., Shepherd, D. N., Harkins, G. W., Suchard, M. A., Lemey, P. & 2 others, Varsani, A. & Martin, D. P., Jan 2020, In : eLife. 9, e51984.

Research output: Contribution to journalArticle

Open Access

Virus discovery in desert tortoise fecal samples: Novel circular single-stranded DNA viruses

Orton, J. P., Morales, M., Fontenele, R. S., Schmidlin, K., Kraberger, S., Leavitt, D. J., Webster, T. H., Wilson, M. A., Kusumi, K., Dolby, G. A. & Varsani, A., Jan 1 2020, In : Viruses. 12, 2, v12020143.

Research output: Contribution to journalArticle

Open Access

Viruses representing two new genomovirus species identified in citrus from Tunisia

Chabi-Jesus, C., Najar, A., Fontenele, R. S., Kumari, S. G., Ramos-González, P. L., Freitas-Astúa, J., Kraberger, S. & Varsani, A., May 1 2020, In : Archives of virology. 165, 5, p. 1225-1229 5 p.

Research output: Contribution to journalArticle

2019

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

Sgouralis, I., Madaan, S., Djutanta, F., Kha, R., Hariadi, R. & Presse, S., Jan 24 2019, In : Journal of Physical Chemistry B. 123, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

A broader view on jamming: from spring networks to circle packings

F. Hagh, V., Corwin, E. I., Stephenson, K. & Thorpe, M., Jan 1 2019, In : Soft Matter. 15, 15, p. 3076-3084 9 p.

Research output: Contribution to journalArticle

Acclimation of nitrifying biomass to phenol leads to persistent resistance to inhibition

Zou, S., Yan, N., Zhang, C., Zhou, Y., Wu, X., Wang, J., Liu, Y., Zhang, Y. & Rittmann, B., Nov 25 2019, In : Science of the Total Environment. 693, 133622.

Research output: Contribution to journalArticle

Accumbens neuroimmune signaling and dysregulation of astrocytic glutamate transport underlie conditioned nicotine-seeking behavior

Namba, M. D., Kupchik, Y. M., Spencer, S. M., Garcia-Keller, C., Goenaga, J. G., Powell, G. L., Vicino, I. A., Hogue, I. B. & Gipson, C. D., Jan 1 2019, In : Addiction Biology. e12797.

Research output: Contribution to journalArticle

1 Scopus citations

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A. & 2 others, Zerbini, F. M. & Davison, A. J., Mar 1 2019, In : Archives of virology. 164, 3, p. 943-946 4 p.

Research output: Contribution to journalArticle

20 Scopus citations

A dopamine-responsive signal transduction controls transcription of salmonella enterica serovar typhimurium virulence genes

Yang, D., Kong, Y., Sun, W., Kong, W. & Shi, Y., Mar 1 2019, In : mBio. 10, 2, e02772-18.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A family of small intrinsically disordered proteins involved in flagellum-dependent motility in salmonella enterica

Oguri, T., Kwon, Y., Woo, J. K. K., Prehna, G., Lee, H., Ning, M., Won, K. J., Lee, J., Mei, S., Shi, Y., Jeong, H. & Lee, H., Jan 1 2019, In : Journal of bacteriology. 201, 2, e00415-18.

Research output: Contribution to journalArticle

1 Scopus citations

Aflatoxin Exposure, Child Stunting, and Dysbiosis in the Intestinal Microbiome among Children in Guatemala

Voth-Gaeddert, L. E., Torres, O., Maldonado, J., Krajmalnik-Brown, R., Rittmann, B. E. & Oerther, D. B., Aug 1 2019, In : Environmental Engineering Science. 36, 8, p. 958-968 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

A General Strategy for Engineering Noncanonical Amino Acid Dependent Bacterial Growth

Koh, M., Yao, A., Gleason, P. R., Mills, J. H. & Schultz, P. G., Oct 16 2019, In : Journal of the American Chemical Society. 141, 41, p. 16213-16216 4 p.

Research output: Contribution to journalArticle

A human organotypic microfluidic tumor model permits investigation of the interplay between patient-derived fibroblasts and breast cancer cells

Truong, D. D., Kratz, A., Park, J. G., Barrientos, E. S., Saini, H., Nguyen, T., Pockaj, B., Mouneimne, G., LaBaer, J. & Nikkhah, M., Jun 15 2019, In : Cancer Research. 79, 12, p. 3139-3151 13 p.

Research output: Contribution to journalArticle

7 Scopus citations