Biodesign Institute

Search results

• CCDC 662155: Experimental Crystal Structure Determination

  Weibel, N. (Contributor), Błaszczyk, A. (Contributor), Von Hänisch, C. (Contributor), Mayor, M. (Contributor), Pobelov, I. (Contributor), Wandlowski, T. (Contributor), Chen, F. (Contributor), Tao, N. (Contributor) & Wandlowski, T. (Contributor), The Cambridge Structural Database, 2008

  DOI: 10.5517/ccq70vs, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccq70vs&sid=DataCite

  Dataset

• Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs

  Luque, J. (Creator), Christy, J. H. (Creator), Hendy, A. J. W. (Creator), Rosenberg, M. S. (Creator), Portell, R. W. (Creator), Kerr, K. A. (Creator) & Palmer, A. R. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.5346076, https://tandf.figshare.com/articles/dataset/Quaternary_intertidal_and_supratidal_crabs_Decapoda_Brachyura_from_tropical_America_and_the_systematic_affinities_of_fossil_fiddler_crabs/5346076

  Dataset

• Additional file 1 of CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

  Du, W. (Creator), Sun, Y. (Creator), Li, G. (Creator), Cao, H. (Creator), Pang, R. (Creator), Li, Y. (Creator) & Gaoyang, L. (Contributor), figshare Academic Research System, 2020

  DOI: 10.6084/m9.figshare.12456899.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_CapsNet-SSP_multilane_capsule_network_for_predicting_human_saliva-secretory_proteins/12456899/1

  Dataset

• Sperm Proteome Maturation in the Mouse Epididymis

  Skerget, S. (Creator), Rosenow, M. A. (Creator), Petritis, K. (Creator) & Karr, T. L. (Creator), Figshare, 2015

  DOI: 10.6084/m9.figshare.1564752.v1, https://figshare.com/articles/Sperm_Proteome_Maturation_in_the_Mouse_Epididymis/1564752/1

  Dataset

• Additional file 1 of CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

  Du, W. (Creator), Sun, Y. (Creator), Li, G. (Creator), Cao, H. (Creator), Pang, R. (Creator), Li, Y. (Creator) & Gaoyang, L. (Contributor), Figshare, 2020

  DOI: 10.6084/m9.figshare.12456899, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_CapsNet-SSP_multilane_capsule_network_for_predicting_human_saliva-secretory_proteins/12456899

  Dataset

• Metabolomic biosignature differentiates melancholic depressive patients from healthy controls

  Liu, Y. (Creator), Yieh, L. (Creator), Yang, T. (Creator), Drinkenburg, W. (Creator), Peeters, P. (Creator), Steckler, T. (Creator), Narayan, V. A. (Creator), Wittenberg, G. (Creator), Ye, J. (Creator) & Yashu, L. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3643544, https://springernature.figshare.com/collections/Metabolomic_biosignature_differentiates_melancholic_depressive_patients_from_healthy_controls/3643544

  Dataset

• CCDC 734018: Experimental Crystal Structure Determination

  Pettit, G. R. (Creator), Meng, Y. (Creator), Pettit, R. K. (Creator), Herald, D. L. (Creator), Cichacz, Z. A. (Creator), Doubek, D. L. (Creator), Richert, L. (Creator) & Pettit, G. R. (Creator), The Cambridge Structural Database, 2011

  DOI: 10.5517/ccsmt06, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccsmt06&sid=DataCite

  Dataset

• Asymmetric focsued reconstruction of human norovirus GII.2 Snow Mountain Virus strain VLP asymmetric unit in T=1 symmetry

  Jung, J. (Contributor), Grant, T. (Contributor), Thomas, D. R. (Contributor), Diehnelt, C. W. (Contributor), Grigorieff, N. (Contributor) & Joshua-Tor, L. (Contributor), Protein Data Bank (PDB), Jun 26 2019

  DOI: 10.2210/pdb6OUC, https://www.wwpdb.org/pdb?id=pdb_00006ouc

  Dataset

• CCDC 772476: Experimental Crystal Structure Determination

  Pettit, G. R. (Creator), Meng, Y. (Creator), Pettit, R. K. (Creator), Herald, D. L. (Creator), Hogan, F. (Creator), Cichacz, Z. A. (Creator) & Pettit, G. R. (Creator), The Cambridge Structural Database, 2011

  DOI: 10.5517/cctxtl3, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/cctxtl3&sid=DataCite

  Dataset

• MOESM5 of Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Chenet, S. M. (Contributor), Escalante, A. A. (Contributor), Zuluaga, L. (Contributor), Taylor, J. (Contributor) & Blair, S. (Contributor), figshare Academic Research System, Sep 22 2015

  DOI: 10.6084/m9.figshare.c.3605909_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3605909_d5.v1

  Dataset

• Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Chenet, S. M. (Creator), Taylor, J. (Creator), Blair, S. (Creator), Zuluaga, L. (Creator) & Escalante, A. A. (Contributor), figshare Academic Research System, 2015

  DOI: 10.6084/m9.figshare.c.3605909.v1, https://figshare.com/collections/Longitudinal_analysis_of_Plasmodium_falciparum_genetic_variation_in_Turbo_Colombia_implications_for_malaria_control_and_elimination/3605909/1

  Dataset

• Comparison of personal and shared frameshift neoantigen vaccines in a mouse mammary cancer model

  Peterson, M. (Contributor), Murphy, S. N. (Creator), Lainson, J. (Creator), Zhang, J. (Creator), Shen, L. (Contributor), Diehnelt, C. W. (Creator) & Johnston, S. (Creator), figshare Academic Research System, 2020

  DOI: 10.6084/m9.figshare.c.4966172.v1, https://springernature.figshare.com/collections/Comparison_of_personal_and_shared_frameshift_neoantigen_vaccines_in_a_mouse_mammary_cancer_model/4966172/1

  Dataset

• Serp-2, a virus-derived apoptosis and inflammasome inhibitor, attenuates liver ischemia-reperfusion injury in mice

  Yaron, J. (Creator), Chen, H. (Creator), Ambadapadi, S. (Contributor), Zhang, L. (Contributor), Tafoya, A. M. (Creator), Munk, B. H. (Creator), Wakefield, D. N. (Creator), Fuentes, J. (Creator), Marques, B. J. (Creator), Harripersaud, K. (Creator), Bartee, M. Y. (Creator), Davids, J. A. (Creator), Zheng, D. (Contributor), Rand, K. (Creator), Dixon, L. (Creator), Moyer, R. W. (Creator), Clapp, W. L. (Creator) & Lucas, A. R. (Creator), figshare Academic Research System, 2019

  DOI: 10.6084/m9.figshare.c.4522781.v1, https://springernature.figshare.com/collections/Serp-2_a_virus-derived_apoptosis_and_inflammasome_inhibitor_attenuates_liver_ischemia-reperfusion_injury_in_mice/4522781/1

  Dataset

• Serp-2, a virus-derived apoptosis and inflammasome inhibitor, attenuates liver ischemia-reperfusion injury in mice

  Yaron, J. (Creator), Chen, H. (Creator), Ambadapadi, S. (Contributor), Zhang, L. (Contributor), Tafoya, A. M. (Creator), Munk, B. H. (Creator), Wakefield, D. N. (Creator), Fuentes, J. (Creator), Marques, B. J. (Creator), Harripersaud, K. (Creator), Bartee, M. Y. (Creator), Davids, J. A. (Creator), Zheng, D. (Contributor), Rand, K. (Creator), Dixon, L. (Creator), Moyer, R. W. (Creator), Clapp, W. L. (Creator) & Lucas, A. R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4522781, https://springernature.figshare.com/collections/Serp-2_a_virus-derived_apoptosis_and_inflammasome_inhibitor_attenuates_liver_ischemia-reperfusion_injury_in_mice/4522781

  Dataset

• Legionella effector AnkX interacts with host nuclear protein PLEKHN1

  Yu, X. (Contributor), Noll, R. R. (Creator), Romero Dueñas, B. P. (Contributor), Allgood, S. C. (Contributor), Barker, K. (Creator), Caplan, J. L. (Creator), Machner, M. P. (Creator), LaBaer, J. (Creator), Qiu, J. (Creator) & Neunuebel, M. R. (Contributor), Figshare, 2018

  DOI: 10.6084/m9.figshare.c.4003684, https://figshare.com/collections/Legionella_effector_AnkX_interacts_with_host_nuclear_protein_PLEKHN1/4003684

  Dataset

• Structure of F. tularensis Virulence Determinant

  Zook, J. (Contributor), Mo, G. (Contributor), Sisco, N. J. (Contributor), Craciunescu, F. M. (Contributor), Hansen, D. (Contributor), Baravati, B. (Contributor), Cherry, B. R. (Contributor), Sykes, K. (Contributor), Wachter, R. (Contributor), Van Horn, W. (Contributor) & Fromme, P. (Contributor), Protein Data Bank (PDB), Jun 10 2015

  DOI: 10.2210/pdb2MU4, https://www.wwpdb.org/pdb?id=pdb_00002mu4

  Dataset

• Additional file 7 of Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression

  Wang, Q. (Creator), Chen, Y. (Creator), Readhead, B. (Creator), Chen, K. (Creator), Su, Y. (Creator), Reiman, E. M. (Creator), Dudley, J. T. (Creator) & Reiman, E. M. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.13357544, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Longitudinal_data_in_peripheral_blood_confirm_that_PM20D1_is_a_quantitative_trait_locus_QTL_for_Alzheimer_s_disease_and_implicate_its_dynamic_role_in_disease_progression/13357544

  Dataset

• Additional file 6 of Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression

  Wang, Q. (Creator), Chen, Y. (Creator), Readhead, B. (Creator), Chen, K. (Creator), Su, Y. (Creator), Reiman, E. M. (Creator), Dudley, J. T. (Creator) & Reiman, E. M. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.13357541, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Longitudinal_data_in_peripheral_blood_confirm_that_PM20D1_is_a_quantitative_trait_locus_QTL_for_Alzheimer_s_disease_and_implicate_its_dynamic_role_in_disease_progression/13357541

  Dataset

• Modeling the Sequence Dependence of Differential Antibody Binding in the Immune Response to Infectious Disease

  Chowdhury, R. (Contributor), Taguchi, A. (Contributor), Kelbauskas, L. (Contributor), Stafford, P. (Contributor), Diehnelt, C. (Contributor), Zhao, Z. (Contributor), Williamson, P. (Contributor), Green, V. (Contributor) & Woodbury, N. (Contributor), Zenodo, Nov 29 2022

  DOI: 10.5281/zenodo.7377844, https://zenodo.org/record/7377844

  Dataset

• Improved Throughput for All-or-Nothing Multicommodity Flows with Arbitrary Demands

  Chaturvedi, A. (Contributor), Chekuri, C. (Contributor), Liu, M. (Contributor), Richa, A. (Contributor), Rost, M. (Contributor), Schmid, S. (Contributor) & Weber, J. (Contributor), Zenodo, Mar 25 2022

  DOI: 10.5281/zenodo.8118453, https://zenodo.org/record/8118453

  Dataset

• Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community

  Feng, J. (Creator), Wang, C. (Creator), Lei, J. (Creator), Yang, Y. (Creator), Yan, Q. (Creator), Zhou, X. (Creator), Tao, X. (Creator), Ning, D. (Creator), Yuan, M. M. (Creator), Qin, Y. (Creator), Shi, Z. J. (Creator), Guo, X. (Creator), He, Z. (Creator), Van Nostrand, J. D. (Creator), Wu, L. (Creator), Bracho-Garillo, R. G. (Creator), Penton, C. (Creator), Cole, J. R. (Creator), Konstantinidis, K. T. (Creator), Luo, Y. (Creator), Schuur, E. A. G. (Creator), Tiedje, J. M. (Creator), Zhou, J. (Creator), Jiajie, F. (Contributor), Mengting, Y. (Contributor), Zhili, H. (Contributor), Nostrand, J. V. (Contributor) & Jizhong, Z. (Contributor), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.4822476, https://springernature.figshare.com/collections/Warming-induced_permafrost_thaw_exacerbates_tundra_soil_carbon_decomposition_mediated_by_microbial_community/4822476

  Dataset

• Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans

  Xu, K. (Creator), Kosoy, R. (Creator), Shameer, K. (Contributor), Kumar, S. (Creator), Liu, L. (Creator), Readhead, B. (Creator), Belbin, G. M. (Creator), Lee, H. (Contributor), Chen, R. (Creator), Dudley, J. T. (Creator) & Kumar, S. (Creator), figshare Academic Research System, 2019

  DOI: 10.6084/m9.figshare.c.4563659.v1, https://springernature.figshare.com/collections/Genome-wide_analysis_indicates_association_between_heterozygote_advantage_and_healthy_aging_in_humans/4563659/1

  Dataset

• Additional file 1: of Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans

  Xu, K. (Contributor), Readhead, B. (Contributor), Dudley, J. T. (Contributor), Lee, H. (Contributor), Shameer, K. (Contributor), Belbin, G. M. (Contributor), Kumar, S. (Contributor), Chen, R. (Contributor), Liu, L. (Contributor) & Kosoy, R. (Contributor), figshare Academic Research System, Jul 2 2019

  DOI: 10.6084/m9.figshare.8480003.v1, https://doi.org/10.6084%2Fm9.figshare.8480003.v1

  Dataset

• Zinc Substituted Reaction Center of the Rhodobacter sphaeroides

  Saer, R. G. (Contributor), Pan, J. (Contributor), Hardjasa, A. (Contributor), Lin, S. (Contributor), Rosell, F. (Contributor), Mauk, A. G. (Contributor), Woodbury, N. (Contributor), Murphy, M. E. P. (Contributor) & Beatty, J. T. (Contributor), Protein Data Bank (PDB), Feb 5 2014

  DOI: 10.2210/pdb4N7K, https://www.wwpdb.org/pdb?id=pdb_00004n7k

  Dataset

• Additional file 7 of Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression

  Wang, Q. (Creator), Chen, Y. (Creator), Readhead, B. (Creator), Chen, K. (Creator), Su, Y. (Creator), Reiman, E. M. (Creator), Dudley, J. T. (Creator) & Reiman, E. M. (Creator), figshare Academic Research System, 2020

  DOI: 10.6084/m9.figshare.13357544.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Longitudinal_data_in_peripheral_blood_confirm_that_PM20D1_is_a_quantitative_trait_locus_QTL_for_Alzheimer_s_disease_and_implicate_its_dynamic_role_in_disease_progression/13357544/1

  Dataset