Fundamental and Applied Microbiomics, Center for (FAM)

Research output

Research output per year 2006 2017 2018 2024

• 158 Article
• 15 Review article
• 7 Comment/debate
• 4 Chapter
• 3 More
  • 2 Editorial
  • 1 Conference contribution

Research output per year

Research output per year

Search results

• 2024

  Draft genome sequence of Sphingomonas paucimobilis strain Sph5, isolated from tap water filtration membrane

  Koroli, S., Buss, K., Blain, J. M., Nakka, G. S., Hong, M., McLean, R. J. C., Plugge, C. M. & Yang, J., Jan 2024, In: Microbiology Resource Announcements. 13, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Sphingomonas 100%
  • Biofilms 61%
  • Sphingomonadaceae 58%
  • Genome 42%
  • Water 42%
• 2023

  Mitigation and use of biofilms in space for the benefit of human space exploration

  Vélez Justiniano, Y. A., Goeres, D. M., Sandvik, E. L., Kjellerup, B. V., Sysoeva, T. A., Harris, J. S., Warnat, S., McGlennen, M., Foreman, C. M., Yang, J., Li, W., Cassilly, C. D., Lott, K. & HerrNeckar, L. E., Dec 2023, In: Biofilm. 5, 100102.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Space Flight 100%
  • Biofilms 76%
  • Weightlessness 24%
  • Extreme Environments 15%
  • Environmental Exposure 10%
  4 Scopus citations

• Prospects of 2D graphene nanomaterials in plant-based agriculture and their fate in terrestrial soil: a critical review

  Das, P., Penton, C. R., Westerhoff, P. & Perreault, F., Sep 20 2023, In: Environmental Science: Nano. 10, 11, p. 2936-2956 21 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanostructured materials 100%
  • Graphene 95%
  • nanomaterial 91%
  • Agriculture 88%
  • Soil 68%

• Toward sustainable space exploration: a roadmap for harnessing the power of microorganisms

  Santomartino, R., Averesch, N. J. H., Bhuiyan, M., Cockell, C. S., Colangelo, J., Gumulya, Y., Lehner, B., Lopez-Ayala, I., McMahon, S., Mohanty, A., Santa Maria, S. R., Urbaniak, C., Volger, R., Yang, J. & Zea, L., Dec 2023, In: Nature communications. 14, 1, 1391.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • space exploration 100%
  • biotechnology 99%
  • Space Flight 94%
  • microorganisms 87%
  • Biotechnology 85%
  13 Scopus citations

• Unraveling mechanisms behind reduced nitrate leaching with graphite nanomaterials addition with fertilizers in soil column experiments

  Das, P., Penton, C. R., Bi, Y. & Westerhoff, P., Oct 2023, In: Chemosphere. 337, 139417.

  Research output: Contribution to journal › Article › peer-review

  • Fertilizers 100%
  • Graphite 87%
  • Nitrates 80%
  • Nanostructured materials 79%
  • Fertilizer 78%
  1 Scopus citations
• 2022

  A vision for spaceflight microbiology to enable human health and habitat sustainability

  Nickerson, C. A., Medina-Colorado, A. A., Barrila, J., Poste, G. & Ott, C. M., Apr 2022, In: Nature Microbiology. 7, 4, p. 471-474 4 p.

  Research output: Contribution to journal › Comment/debate › peer-review
  3 Scopus citations

• Coupled abiotic-biotic cycling of nitrous oxide in tropical peatlands

  Buessecker, S., Sarno, A. F., Reynolds, M. C., Chavan, R., Park, J., Fontánez Ortiz, M., Pérez-Castillo, A. G., Panduro Pisco, G., Urquiza-Muñoz, J. D., Reis, L. P., Ferreira-Ferreira, J., Furtunato Maia, J. M., Holbert, K. E., Penton, C. R., Hall, S. J., Gandhi, H., Boëchat, I. G., Gücker, B., Ostrom, N. E. & Cadillo-Quiroz, H., Dec 2022, In: Nature Ecology and Evolution. 6, 12, p. 1881-1890 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • peatlands 100%
  • peat soil 99%
  • Nitrous Oxide 93%
  • nitrous oxide 90%
  • Soil 86%
  6 Scopus citations

• Do small RNAs unlock the below ground microbiome-plant interaction mystery?

  Regmi, R., Penton, C. R., Anderson, J. & Gupta, V. V. S. R., Nov 1 2022, In: Frontiers in Molecular Biosciences. 9, 1017392.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Rhizosphere 100%
  • Microbiota 96%
  • Soil 82%
  • RNA 67%
  • Ecosystem 38%
  3 Scopus citations

• Impacts of graphitic nanofertilizers on nitrogen cycling in a sandy, agricultural soil

  Das, P., Davis, K., Penton, C. R., Westerhoff, P. & Bi, Y., Jun 2022, In: Journal of Nanoparticle Research. 24, 6, 120.

  Research output: Contribution to journal › Article › peer-review

  • Nitrogen 100%
  • Cycling 93%
  • Nitrification 83%
  • Soil 80%
  • soils 70%
  3 Scopus citations

• Role of RpoS in Regulating Stationary Phase Salmonella Typhimurium Pathogenesis-Related Stress Responses under Physiological Low Fluid Shear Force Conditions

  Meléndez, K. F., Crenshaw, K., Barrila, J., Yang, J., Gangaraju, S., Davis, R. R., Forsyth, R. J., Ott, C. M., Kader, R., Curtiss, R., Roland, K. & Nickerson, C. A., Aug 2022, In: mSphere. 7, 4

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Physiological Stress 100%
  • Salmonella typhimurium 96%
  • Epithelial Cells 35%
  • Salmonella 35%
  • Virulence 29%
  1 Scopus citations

• Spaceflight Analogue Culture Enhances the Host-Pathogen Interaction Between Salmonella and a 3-D Biomimetic Intestinal Co-Culture Model

  Barrila, J., Yang, J., Franco Meléndez, K. P., Yang, S., Buss, K., Davis, T. J., Aronow, B. J., Bean, H. D., Davis, R. R., Forsyth, R. J., Ott, C. M., Gangaraju, S., Kang, B. Y., Hanratty, B., Nydam, S. D., Nauman, E. A., Kong, W., Steel, J. & Nickerson, C. A., May 31 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 705647.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Host-Pathogen Interactions 100%
  • Space Flight 98%
  • Weightlessness 98%
  • Biomimetics 96%
  • Salmonella 80%
  6 Scopus citations

• Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin

  Wen, T., Xie, P., Penton, C. R., Hale, L., Thomashow, L. S., Yang, S., Ding, Z., Su, Y., Yuan, J. & Shen, Q., Dec 2022, In: Microbiome. 10, 1, 177.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Rhizosphere 100%
  • Microbiota 63%
  • Fusarium 33%
  • Bdellovibrio 24%
  • behenic acid 23%
  23 Scopus citations
• 2021

  Agricultural practices drive biological loads, seasonal patterns and potential pathogens in the aerobiome of a mixed-land-use dryland

  Finn, D. R., Maldonado, J., de Martini, F., Yu, J., Penton, C. R., Fontenele, R. S., Schmidlin, K., Kraberger, S., Varsani, A., Gile, G. H., Barker, B., Kollath, D. R., Muenich, R. L., Herckes, P., Fraser, M. & Garcia-Pichel, F., Dec 1 2021, In: Science of the Total Environment. 798, 149239.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens 100%
  • Land use 88%
  • agricultural practice 80%
  • pathogen 69%
  • Animals 53%
  10 Scopus citations

• Evaluating the effect of spaceflight on the host–pathogen interaction between human intestinal epithelial cells and Salmonella Typhimurium

  Barrila, J., Sarker, S. F., Hansmeier, N., Yang, S., Buss, K., Briones, N., Park, J., Davis, R. R., Forsyth, R. J., Ott, C. M., Sato, K., Kosnik, C., Yang, A., Shimoda, C., Rayl, N., Ly, D., Landenberger, A., Wilson, S. D., Yamazaki, N., Steel, J., & 5 othersMontano, C., Halden, R. U., Cannon, T., Castro-Wallace, S. L. & Nickerson, C. A., Dec 2021, In: npj Microgravity. 7, 1, 9.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Salmonella 100%
  • Epithelial Cells 96%
  • salmonella 96%
  • Pathogens 83%
  • Space Flight 80%
  10 Scopus citations

• Longitudinal characterization of multispecies microbial populations recovered from spaceflight potable water

  Yang, J., Barrila, J., Mark Ott, C., King, O., Bruce, R., McLean, R. J. C. & Nickerson, C. A., Dec 2021, In: npj Biofilms and Microbiomes. 7, 1, 70.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Space Flight 100%
  • Ecosystem 85%
  • Drinking Water 77%
  • Microbiota 76%
  • Life Support Systems 63%
  8 Scopus citations
• 2020

  CapsNet-SSP: Multilane capsule network for predicting human saliva-secretory proteins

  Du, W., Sun, Y., Li, G., Cao, H., Pang, R. & Li, Y., Jun 9 2020, In: BMC bioinformatics. 21, 1, 237.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Protein 100%
  • Saliva 93%
  • Proteins 87%
  • Capsules 85%
  • Human 85%
  9 Scopus citations

• DEEPSMP: A deep learning model for predicting the ectodomain shedding events of membrane proteins

  Cao, Z., Du, W., Li, G. & Cao, H., Jun 1 2020, In: Journal of Bioinformatics and Computational Biology. 18, 3, 2050017.

  Research output: Contribution to journal › Article › peer-review

  • Proteins 66%
  • Deep learning 64%
  • Membranes 60%
  • Membrane Proteins 60%
  • Protein 30%
  3 Scopus citations

• DeepUEP: Prediction of Urine Excretory Proteins Using Deep Learning

  Du, W., Pang, R., Li, G., Cao, H., Li, Y. & Liang, Y., 2020, In: IEEE Access. 8, p. 100251-100261 11 p., 9102239.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Proteins 100%
  • Deep learning 97%
  • Biomarkers 74%
  • Biological Marker 53%
  • Protein 45%
  3 Scopus citations

• Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming

  Guo, X., Gao, Q., Yuan, M., Wang, G., Zhou, X., Feng, J., Shi, Z., Hale, L., Wu, L., Zhou, A., Tian, R., Liu, F., Wu, B., Chen, L., Jung, C. G., Niu, S., Li, D., Xu, X., Jiang, L., Escalas, A., & 13 othersWu, L., He, Z., Van Nostrand, J. D., Ning, D., Liu, X., Yang, Y., Schuur, E. A. G., Konstantinidis, K. T., Cole, J. R., Penton, C. R., Luo, Y., Tiedje, J. M. & Zhou, J., Dec 1 2020, In: Nature communications. 11, 1, 4897.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • respiration 100%
  • genes 95%
  • Soil 88%
  • soils 84%
  • Carbon 80%
  70 Scopus citations

• Global Organization and Proposed Megataxonomy of the Virus World

  Koonin, E. V., Dolja, V. V., Krupovic, M., Varsani, A., Wolf, Y. I., Yutin, N., Zerbini, F. M. & Kuhn, J. H., May 20 2020, In: Microbiology and molecular biology reviews : MMBR. 84, 2

  Research output: Contribution to journal › Review article › peer-review

  • Viruses 100%
  • Baltimore 47%
  • RNA Viruses 42%
  • DNA Viruses 30%
  • Phylogeny 29%
  316 Scopus citations

• Novel nanovirus and associated alphasatellites identified in milk vetch plants with chlorotic dwarf disease in Iran

  Hassan-Sheikhi, P., Heydarnejad, J., Massumi, H., Kraberger, S. & Varsani, A., Jan 15 2020, In: Virus research. 276, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Astragalus Plant 100%
  • Nanovirus 99%
  • Iran 45%
  • DNA 26%
  • Vicia faba 14%
  7 Scopus citations

• Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt

  Yuan, J., Wen, T., Zhang, H., Zhao, M., Penton, C. R., Thomashow, L. S. & Shen, Q., Dec 1 2020, In: ISME Journal. 14, 12, p. 2936-2950 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • wilt 100%
  • Fusarium 82%
  • disease occurrence 80%
  • Fusarium wilt 76%
  • Soil 68%
  158 Scopus citations

• Suppression of water-bloom cyanobacterium Microcystis aeruginosa by algaecide hydrogen peroxide maximized through programmed cell death

  Zhou, T., Cao, H., Zheng, J., Teng, F., Wang, X., Lou, K., Zhang, X. & Tao, Y., Jul 5 2020, In: Journal of Hazardous Materials. 393, 122394.

  Research output: Contribution to journal › Article › peer-review

  • Algicide 100%
  • Cyanobacteria 91%
  • Microcystis 91%
  • Cell death 82%
  • Herbicides 73%
  57 Scopus citations

• The trait repertoire enabling cyanobacteria to bloom assessed through comparative genomic complexity and metatranscriptomics

  Cao, H., Shimura, Y., Steffen, M. M., Yang, Z., Lu, J., Joel, A., Jenkins, L., Kawachi, M., Yin, Y. & Garcia-Pichel, F., 2020, In: mBio. 11, 3, p. 1-14 14 p., e01155-20.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cyanobacteria 100%
  • Ecosystem 85%
  • Genomics 77%
  • Eutrophication 19%
  • Water 14%
  10 Scopus citations

• Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community

  Feng, J., Wang, C., Lei, J., Yang, Y., Yan, Q., Zhou, X., Tao, X., Ning, D., Yuan, M. M., Qin, Y., Shi, Z. J., Guo, X., He, Z., Van Nostrand, J. D., Wu, L., Bracho-Garillo, R. G., Penton, C. R., Cole, J. R., Konstantinidis, K. T., Luo, Y., & 3 othersSchuur, E. A. G., Tiedje, J. M. & Zhou, J., Jan 17 2020, In: Microbiome. 8, 1, 3.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tundra 100%
  • Permafrost 97%
  • Soil 56%
  • Microbiota 51%
  • Carbon 51%
  80 Scopus citations

• Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria

  Tao, X., Feng, J., Yang, Y., Wang, G., Tian, R., Fan, F., Ning, D., Bates, C. T., Hale, L., Yuan, M. M., Wu, L., Gao, Q., Lei, J., Schuur, E. A. G., Yu, J., Bracho, R., Luo, Y., Konstantinidis, K. T., Johnston, E. R., Cole, J. R., & 3 othersPenton, C. R., Tiedje, J. M. & Zhou, J., Jun 5 2020, In: Microbiome. 8, 1, 84.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lignin 100%
  • Proteobacteria 88%
  • Soil 70%
  • Tundra 62%
  • Burkholderia 48%
  41 Scopus citations
• 2019

  Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

  Siddell, S. G., Walker, P. J., Lefkowitz, E. J., Mushegian, A. R., Adams, M. J., Dutilh, B. E., Gorbalenya, A. E., Harrach, B., Harrison, R. L., Junglen, S., Knowles, N. J., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A., & 2 othersZerbini, F. M. & Davison, A. J., Mar 1 2019, In: Archives of virology. 164, 3, p. 943-946 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Viruses 100%
  94 Scopus citations

• Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake, Ohio, USA)

  Zhu, B., Cao, H., Li, G., Du, W., Xu, G., Domingo, J. S., Gu, H., Xu, N., Duan, S. & Lu, J., Feb 2019, In: Harmful Algae. 82, p. 9-18 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Microcystis 100%
  • Biodiversity 83%
  • Cylindrospermopsis 81%
  • Lakes 76%
  • algal bloom 53%
  13 Scopus citations

• Correction: Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community (Microbiome (2018) 6:87 DOI: 10.1186/s40168-018-0475-7)

  Lim, E., Rodriguez, C. & Holtz, L. R., Feb 12 2019, In: Microbiome. 7, 1, 22.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Fast Green 100%
  • Amniotic Fluid 65%
  • Microbiota 59%
  • Publications 50%
  • Emotions 47%
  5 Scopus citations

• Deamination reaction mechanisms of protonated amines under hydrothermal conditions

  Robinson, K. J., Gould, I., Fecteau, K. M., Hartnett, H., Williams, L. & Shock, E., Jan 1 2019, In: Geochimica et Cosmochimica Acta. 244, p. 113-128 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deamination 100%
  • amine 88%
  • Amine 54%
  • amino acid 39%
  • reaction kinetics 31%
  22 Scopus citations

• Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil

  Gupta, V. V. S. R., Zhang, B., Penton, C. R., Yu, J. & Tiedje, J. M., Nov 5 2019, In: Frontiers in Molecular Biosciences. 6, 115.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Nitrogen Fixation 100%
  • Mediterranean Region 95%
  • Poaceae 81%
  • Soil 70%
  • Leaf Like Crystal 27%
  30 Scopus citations

• Dinoflagellate nucleus contains an extensive endomembrane network, the nuclear net

  Gavelis, G. S., Herranz, M., Wakeman, K. C., Ripken, C., Mitarai, S., Gile, G., Keeling, P. J. & Leander, B. S., Dec 1 2019, In: Scientific reports. 9, 1, 839.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Dinoflagellida 100%
  • Nuclear Envelope 50%
  • Membranes 39%
  • Freeze Substitution 35%
  • Kinetochores 28%
  10 Scopus citations

• Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera)

  Kraberger, S., Cook, C. N., Schmidlin, K., Fontenele, R. S., Bautista, J., Smith, B. & Varsani, A., Jul 2019, In: Infection, Genetics and Evolution. 71, p. 179-188 10 p.

  Research output: Contribution to journal › Article › peer-review

  • ssDNA viruses 100%
  • Microviridae 87%
  • Bees 86%
  • honey 85%
  • Honey 85%
  26 Scopus citations

• Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities

  Xue, C., Hao, Y., Pu, X., Penton, C., Wang, Q., Zhao, M., Zhang, B., Ran, W., Huang, Q., Shen, Q. & Tiedje, J. M., Jan 1 2019, In: Biology and Fertility of Soils. 55, 1, p. 79-88 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Mycobiome 100%
  • genetic marker 81%
  • fungal communities 70%
  • Genetic Markers 64%
  • internal transcribed spacers 57%
  31 Scopus citations

• Energy oversupply to tissues: A single mechanism possibly underlying multiple cancer risk factors

  Wu, D. J., Aktipis, C. A. & Pepper, J. W., Jan 21 2019, In: Evolution, Medicine and Public Health. 2019, 1, p. 9-16 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • cancer risk 100%
  • risk factor 89%
  • risk factors 85%
  • cancer 70%
  • neoplasms 66%
  6 Scopus citations

• Evidence of age-related improvement in the foraging efficiency of Adélie penguins

  Lescroël, A., Ballard, G., Massaro, M., Dugger, K., Jennings, S., Pollard, A., Porzig, E., Schmidt, A., Varsani, A., Grémillet, D. & Ainley, D., Dec 1 2019, In: Scientific reports. 9, 1, 3375.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Spheniscidae 100%
  • Breeding 67%
  • Proxy 61%
  • Longitudinal Studies 48%
  • Demography 37%
  16 Scopus citations

• Geochemical-compositional-functional changes in arctic soil microbiomes post land submergence revealed by metagenomics

  Wang, N., Guo, Y., Li, G., Xia, Y., Ma, M., Zang, J., Ma, Y., Yin, X., Han, W., Lv, J. & Cao, H., 2019, In: Microbes and Environments. 34, 2, p. 180-190 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • frigid soils 100%
  • functional change 79%
  • submergence 72%
  • Metagenomics 71%
  • Soil 62%
  7 Scopus citations

• Kin terms and fitness interdependence

  Cronk, L., Steklis, D., Steklis, N., van den Akker, O. & Aktipis, C. A., May 2019, In: Evolution and Human Behavior. 40, 3, p. 281-291 11 p.

  Research output: Contribution to journal › Review article › peer-review

  • Kin Terms 100%
  • Anthropology 80%
  • Marriage 70%
  • Fitness 64%
  • Interdependence 63%
  33 Scopus citations

• Knowledge and attitudes towards breastfeeding practices: A cross-sectional survey of postnatal mothers in China

  Hamze, L., Mao, J. & Reifsnider, E., Jul 2019, In: Midwifery. 74, p. 68-75 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Breast Feeding 100%
  • China 81%
  • Cross-Sectional Studies 65%
  • Mothers 63%
  • Postpartum Period 23%
  38 Scopus citations

• Long-term warming in Alaska enlarges the diazotrophic community in deep soils

  Feng, J., Penton, C., He, Z., Van Nostrand, J. D., Yuan, M. M., Wu, L., Wang, C., Qin, Y., Shi, Z. J., Guo, X., Schuur, E. A. G., Luo, Y., Bracho, R., Konstantinidis, K. T., Cole, J. R., Tiedje, J. M., Yang, Y. & Zhou, J., Jan 1 2019, In: mBio. 10, 1, e02521-18.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tundra 100%
  • Soil 98%
  • Permafrost 24%
  • Biomass 24%
  • Ecosystem 21%
  23 Scopus citations

• Microbial stress: Spaceflight-induced alterations in microbial virulence and infectious disease risks for the crew

  Mark Ott, C., Crabbé, A., Wilson, J. W., Barrila, J., Castro-Wallace, S. L. & Nickerson, C. A., Jan 1 2019, Stress Challenges and Immunity in Space: From Mechanisms to Monitoring and Preventive Strategies. Springer International Publishing, p. 327-355 29 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Pathogens 100%
  • Space Flight 95%
  • Virulence 64%
  • Communicable Diseases 63%
  • Salmonella 23%
  3 Scopus citations

• Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand

  Richet, C., Kraberger, S., Filloux, D., Bernardo, P., Harkins, G. W., Martin, D. P., Roumagnac, P. & Varsani, A., Jan 22 2019, In: Archives of virology. 164, 1, p. 237-242 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Apiaceae 100%
  • Circular DNA 86%
  • Poaceae 78%
  • DNA Viruses 77%
  • South Africa 66%
  10 Scopus citations

• Patterns and Correlates of Self-Reported Physical Activity in a Cohort of Racially Diverse Pregnant Adolescents

  Steinl, G. K., Whisner, C., Pressman, E. K., Cooper, E. M., Groth, S. W. & O'Brien, K. O., Feb 2019, In: Journal of Pediatric and Adolescent Gynecology. 32, 1, p. 51-56 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Exercise 100%
  • Metabolic Equivalent 94%
  • Pregnancy 31%
  • Pregnancy Induced Hypertension 21%
  • Maternal Age 18%
  10 Scopus citations

• Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

  Dorrell, R. G., Azuma, T., Nomura, M., de Kerdrel, G. A., Paoli, L., Yang, S., Bowler, C., Ishii, K. I., Miyashita, H., Gile, G. & Kamikawa, R., Apr 2 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 14, p. 6914-6923 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Plastids 100%
  • Plastid Genomes 30%
  • Photosynthesis 24%
  • Chloroplast Proteins 14%
  • Mitochondria 13%
  53 Scopus citations

• Production of carboxylic acids from aldehydes under hydrothermal conditions: A kinetics study of benzaldehyde

  Fecteau, K. M., Gould, I., Glein, C. R., Williams, L., Hartnett, H. & Shock, E., Feb 21 2019, In: ACS Earth and Space Chemistry. 3, 2, p. 170-191 22 p.

  Research output: Contribution to journal › Article › peer-review

  • aldehydes 100%
  • carboxylic acids 99%
  • carboxylic acid 80%
  • aldehyde 77%
  • Disproportionation 69%
  15 Scopus citations

• Recommendations for soil microbiome analyses

  Nannipieri, P., Penton, C. R., Purahong, W., Schloter, M. & van Elsas, J. D., Nov 1 2019, In: Biology and Fertility of Soils. 55, 8, p. 765-766 2 p.

  Research output: Contribution to journal › Editorial › peer-review

  Open Access
  63 Scopus citations

• Reply Re: "amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community"

  Lim, E., Rodriguez, C. & Holtz, L. R., Feb 12 2019, In: Microbiome. 7, 1, 21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Amniotic Fluid 100%
  • Microbiota 91%
  • Pregnancy 55%
  • Validation Studies 51%
  • Health 22%
  7 Scopus citations

• Reshaping the rhizosphere microbiome by bio-organic amendment to enhance crop yield in a maize-cabbage rotation system

  Qiao, C., Penton, C., Xiong, W., Liu, C., Wang, R., Liu, Z., Xu, X., Li, R. & Shen, Q., Oct 2019, In: Applied Soil Ecology. 142, p. 136-146 11 p.

  Research output: Contribution to journal › Article › peer-review

  • bio-organic fertilizer 100%
  • Rhizosphere 94%
  • Fertilizers 94%
  • Brassica 82%
  • organic fertiliser 75%
  62 Scopus citations

• Six-Week High-Fat Diet Alters the Gut Microbiome and Promotes Cecal Inflammation, Endotoxin Production, and Simple Steatosis without Obesity in Male Rats

  Crawford, M., Whisner, C., Al-Nakkash, L. & Sweazea, K., Feb 1 2019, In: Lipids. 54, 2-3, p. 119-131 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Endotoxin 100%
  • High Fat Diet 77%
  • Endotoxins 76%
  • Gastrointestinal Microbiome 75%
  • Obesity 53%
  26 Scopus citations

• Suppression of banana Panama disease induced by soil microbiome reconstruction through an integrated agricultural strategy

  Shen, Z., Xue, C., Penton, C., Thomashow, L. S., Zhang, N., Wang, B., Ruan, Y., Li, R. & Shen, Q., Jan 2019, In: Soil Biology and Biochemistry. 128, p. 164-174 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Fumigation 100%
  • Panama disease 92%
  • Panama 88%
  • Musa 85%
  • fumigation 77%
  75 Scopus citations