Description
Contained herein are scripts for making all-atom models of a Rhodobacter sphaeroides chromatophore.
Also, configuration scripts for Molecular Dynamics (MD) and Brownian Dynamics (BD) simulations of the aforementioned model using the simulation package NAMD. Additionally, there are scripts to run APBS calculations.
Below are links to the chromatophore structure file, gridpdb file and map file required to run the NAMD simulation. https://drive.google.com/a/asu.edu/file/d/10gVADYl320HJiNoe4ilagAKoI7UeR638/view?usp=sharing https://drive.google.com/a/asu.edu/file/d/1MZpm3ABXIPjfbKYLOZOSKbmQJZx4yma1/view?usp=sharing https://drive.google.com/a/asu.edu/file/d/1v9Ni3OlrG45qfA5bO2meIc5xwxT8A1En/view?usp=sharing
Below here is a link to the Movies for the submitted manuscript. https://drive.google.com/a/asu.edu/file/d/1N4GmSsWBGxJVrYXVWBHhP-Stf5ASWkZx/view?usp=sharing
Also, configuration scripts for Molecular Dynamics (MD) and Brownian Dynamics (BD) simulations of the aforementioned model using the simulation package NAMD. Additionally, there are scripts to run APBS calculations.
Below are links to the chromatophore structure file, gridpdb file and map file required to run the NAMD simulation. https://drive.google.com/a/asu.edu/file/d/10gVADYl320HJiNoe4ilagAKoI7UeR638/view?usp=sharing https://drive.google.com/a/asu.edu/file/d/1MZpm3ABXIPjfbKYLOZOSKbmQJZx4yma1/view?usp=sharing https://drive.google.com/a/asu.edu/file/d/1v9Ni3OlrG45qfA5bO2meIc5xwxT8A1En/view?usp=sharing
Below here is a link to the Movies for the submitted manuscript. https://drive.google.com/a/asu.edu/file/d/1N4GmSsWBGxJVrYXVWBHhP-Stf5ASWkZx/view?usp=sharing
| Date made available | Oct 11 2019 |
|---|---|
| Publisher | Mendeley Data |