Additional file 15 of Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data

Additional file 15: Gene expression differences between male XY and female XX samples. Sex differences in gene expression for whole blood, brain cortex, breast, liver, and thyroid samples for when samples were aligned to a default reference genome and to a reference genome informed on the sex chromosome complement. Showing sex differences in gene expression between reference genomes used for alignment and for when samples were aligned using HISAT and STAR.