3VDI : Structure of the FMO protein from Pelodictyon phaeum

  • R. E. Blankenship (Contributor)
  • Chadwick R. Larson (Contributor)
  • Heather J. Matthies (Contributor)
  • L. Lauman (Contributor)
  • Dale E. Tronrud (Contributor)
  • Jianzhong Wen (Contributor)
  • James Allen (Contributor)
  • Chenda O. Seng (Contributor)

Dataset

Description

Experimental Technique/Method:X-RAY DIFFRACTION
Resolution:1.99
Classification:PHOTOSYNTHESIS
Release Date:2012-01-25
Deposition Date:2012-01-05
Revision Date:2012-04-11#2012-05-09
Molecular Weight:47777.18
Macromolecule Type:Protein
Residue Count:367
Atom Site Count:3282
DOI:10.2210/pdb3vdi/pdb

Abstract:
The Fenna-Matthews-Olson antenna protein from the green bacterium Pelodictyon phaeum mediates the energy transfer from a peripheral antenna complex to the membrane-bound reaction center. The three-dimensional structure of this protein has been previously modeled using X-ray diffraction to a resolution limit of 2.0 Å, with R (work) and R (free) values of 16.6 and 19.9%, respectively (Larson et al., Photosynth Res 107:139-150, 2011). This model shows the protein as consisting of β-sheets surrounding several bacteriochlorophyll cofactors. While most of the model clearly matches the electron density maps, in this paper we re-examine the electron density for a specific feature, namely the eighth bacteriochlorophyll a cofactor. This electron density is now interpreted as arising primarily from the end of an otherwise disordered polyethylene glycol molecule. Additional electron density is present but the density is weak and cannot be unambiguously assigned. The new model has R (work) and R (free) values of 16.2 and 19.0%, respectively.
Date made availableJan 25 2012
PublisherRCSB-PDB

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